TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821532.1|CN821532 HRO4426_D05_G10ZS5 Lib AA069E1X Aven... 82 7e-017
gb|CN814842.1|CN814842 HRO4503_A11_B21ZS5 Lib AA071E1X Aven... 29 1.00
gb|CN815402.1|CN815402 HRO4509_C05_E09ZS5 Lib AA071E1X Aven... 29 1.00
gb|CN815459.1|CN815459 HRO4509_H07_O13ZS5 Lib AA071E1X Aven... 29 1.00
gb|CN818593.1|CN818593 HRO4457_G10_N19ZS5 Lib AA070E1X Aven... 29 1.00
gb|CN819753.1|CN819753 HRO4403_G01_N01ZS5 Lib AA069E1X Aven... 29 1.00
gb|CN820408.1|CN820408 HRO4419_A05_B09ZS5 Lib AA069E1X Aven... 29 1.00
gb|CN821172.1|CN821172 HRO4428_C09_F18ZS5 Lib AA069E1X Aven... 29 1.00
gb|AF072737.1|AF072737 Avena sativa acetyl-CoA carboxylase ... 27 2.6
gb|CK780237.1|CK780237 umn28 UMN cDNA from oat Avena sativa... 27 3.6
gb|CN815571.1|CN815571 HRO4513_B07_C13ZS5 Lib AA071E1X Aven... 27 3.6
gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Aven... 27 3.6
gb|CN817295.1|CN817295 HRO4454_D02_H04ZS5 Lib AA070E1X Aven... 24 4.6
gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN814878.1|CN814878 HRO4503_E02_J03ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN814901.1|CN814901 HRO4503_G03_N05ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN815758.1|CN815758 HRO4510_B10_C20ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN815950.1|CN815950 HRO4515_C05_F09ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN816257.1|CN816257 HRO4518_F11_K22ZS5 Lib AA071E1X Aven... 26 4.9
gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Aven... 26 4.9
gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Aven... 26 4.9
gb|CN817667.1|CN817667 HRO4463_A06_A11ZS5 Lib AA070E1X Aven... 26 4.9
gb|CN818255.1|CN818255 HRO4470_D11_H22ZS5 Lib AA070E1X Aven... 26 4.9
gb|CN818740.1|CN818740 HRO4468_B09_C18ZS5 Lib AA070E1X Aven... 26 4.9
gb|CN819477.1|CN819477 HRO4406_E04_I08ZS5 Lib AA069E1X Aven... 26 4.9
gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Aven... 26 4.9
gb|CN814958.1|CN814958 HRO4504_C12_F24ZS5 Lib AA071E1X Aven... 26 6.7
gb|CN815940.1|CN815940 HRO4515_B07_D13ZS5 Lib AA071E1X Aven... 26 6.7
gb|CN816142.1|CN816142 HRO4517_D12_G23ZS5 Lib AA071E1X Aven... 26 6.7
gb|CN818654.1|CN818654 HRO4467_E10_I19ZS5 Lib AA070E1X Aven... 26 6.7
gb|CN820532.1|CN820532 HRO4413_D12_G23ZS5 Lib AA069E1X Aven... 26 6.7
gb|M18822.1|ASTPHT3A Avena sativa type 3 phytochrome gene (... 26 6.7
emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3) 26 6.7
emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochr... 26 6.7
emb|CQ798732.1| Sequence 1 from Patent EP1411127 26 6.7
gb|BE439286.1|BE439286 CDO506_WHE04G12F ITEC CDO Oat cDNA L... 25 9.2
gb|CN814867.1|CN814867 HRO4503_D02_H03ZS5 Lib AA071E1X Aven... 25 9.2
gb|CN815821.1|CN815821 HRO4510_H02_O04ZS5 Lib AA071E1X Aven... 25 9.2
gb|CN815975.1|CN815975 HRO4515_E06_J11ZS5 Lib AA071E1X Aven... 25 9.2
gb|CN816790.1|CN816790 HRO4524_G09_N18ZS5 Lib AA071E1X Aven... 25 9.2
gb|CN818807.1|CN818807 HRO4456_B05_C10ZS5 Lib AA070E1X Aven... 25 9.2
gb|CN820861.1|CN820861 HRO4420_G09_N18ZS5 Lib AA069E1X Aven... 25 9.2
gb|CN821650.1|CN821650 HRO4408_F10_L20ZS5 Lib AA069E1X Aven... 25 9.2
>gb|CN821532.1|CN821532 HRO4426_D05_G10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D05_G10, mRNA
sequence
Length = 755
Score = 82.2 bits (173), Expect = 7e-017
Identities = 35/98 (35%), Positives = 56/98 (57%)
Frame = +1 / +1
Query: 319 LPFARDRIVECFLWILGVYYEPCHSRARIILTMVIAIVTLLDDIFDSFATPQECEILTNC 498
L ++RDR+VEC+ W VYYE +RARIIL +IAI + DD +D AT EC+ L
Sbjct: 31 LTYSRDRVVECYFWSYTVYYEQEFTRARIILAKIIAIGAMTDDTYDVRATLMECKQLNEA 210
Query: 499 IESWDPKGAQDLPGCMKFALEKILDSYQTITNMLHRED 612
I+ W+ LP ++ K++ +++ + L ++
Sbjct: 211 IQRWEESVVFILPDYLQKFYLKLISTFKDFDDELEPDE 324
Score = 37.3 bits (75), Expect = 0.002
Identities = 26/69 (37%), Positives = 34/69 (49%)
Frame = -2 / -1
Query: 536 GRS*APLGSQLSMQLVSISHSCGVAKESKISSKSVTMAITIVNIIRALE*HGS*YTPKIH 357
G+ L S L + +S HS VA+ S +SS +AI + II A S*YT
Sbjct: 248 GKIKTTLSSHLCIASLSCLHSIKVARTS*VSSVIAPIAIILARIILARVNSCS*YTVYDQ 69
Query: 356 RKHSTILSR 330
+ HST SR
Sbjct: 68 K*HSTTRSR 42
>gb|CN814842.1|CN814842 HRO4503_A11_B21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A11_B21, mRNA sequence
Length = 667
Score = 28.6 bits (56), Expect = 1.00
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 522 GSRPPRLHEICSRED 566
G PPR+H IC RE+
Sbjct: 303 GCYPPRVHHICKREE 347
>gb|CN815402.1|CN815402 HRO4509_C05_E09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C05_E09, mRNA sequence
Length = 769
Score = 28.6 bits (56), Expect = 1.00
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2 / +3
Query: 299 ICRSDQNFLSHEIESWSVFYG 361
IC + +SHEI WS+ YG
Sbjct: 507 ICYGSYHPISHEINIWSLVYG 569
>gb|CN815459.1|CN815459 HRO4509_H07_O13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_H07_O13, mRNA sequence
Length = 642
Score = 28.6 bits (56), Expect = 1.00
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 522 GSRPPRLHEICSRED 566
G PPR+H IC RE+
Sbjct: 262 GCYPPRVHHICKREE 306
>gb|CN818593.1|CN818593 HRO4457_G10_N19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_G10_N19, mRNA sequence
Length = 858
Score = 28.6 bits (56), Expect = 1.00
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2 / -3
Query: 299 ICRSDQNFLSHEIESWSVFYG 361
IC + +SHEI WS+ YG
Sbjct: 499 ICYGSYHPISHEINIWSLVYG 437
>gb|CN819753.1|CN819753 HRO4403_G01_N01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_G01_N01, mRNA
sequence
Length = 726
Score = 28.6 bits (56), Expect = 1.00
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 522 GSRPPRLHEICSRED 566
G PPR+H IC RE+
Sbjct: 422 GCYPPRVHHICKREE 466
>gb|CN820408.1|CN820408 HRO4419_A05_B09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_A05_B09, mRNA
sequence
Length = 550
Score = 28.6 bits (56), Expect = 1.00
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 522 GSRPPRLHEICSRED 566
G PPR+H IC RE+
Sbjct: 87 GCYPPRVHHICKREE 131
>gb|CN821172.1|CN821172 HRO4428_C09_F18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_C09_F18, mRNA
sequence
Length = 727
Score = 28.6 bits (56), Expect = 1.00
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 522 GSRPPRLHEICSRED 566
G PPR+H IC RE+
Sbjct: 317 GCYPPRVHHICKREE 361
>gb|AF072737.1|AF072737 Avena sativa acetyl-CoA carboxylase mRNA, partial cds
Length = 3031
Score = 27.2 bits (53), Expect = 2.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1 / +1
Query: 456 IENIVQECHDGDNHCQYYPGS*MTRF 379
+E+ +CH HC Y PG RF
Sbjct: 1450 LESCNNQCH*SHLHCGYLPGGRRYRF 1527
>gb|CK780237.1|CK780237 umn28 UMN cDNA from oat Avena sativa cDNA clone JMT4_D06 5', mRNA
sequence
Length = 636
Score = 26.7 bits (52), Expect = 3.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / -2
Query: 211 SHAAFHLSHTHGCNTL 164
+H + +SH GCNTL
Sbjct: 575 AHVSISMSHVSGCNTL 528
>gb|CN815571.1|CN815571 HRO4513_B07_C13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B07_C13, mRNA sequence
Length = 757
Score = 26.7 bits (52), Expect = 3.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2 / -3
Query: 347 STILSRAKGSFDPICISSHHLVRI 276
+TIL A+ SFD + HH+VR+
Sbjct: 620 TTILLAAEDSFD*LLQRRHHMVRL 549
>gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B10_C19, mRNA sequence
Length = 716
Score = 26.7 bits (52), Expect = 3.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1 / -2
Query: 87 HVGQHHLQTASRERDGFIEYCLP 19
H+G +HL SRE + CLP
Sbjct: 277 HLGDYHLMIQSRELIEMLLMCLP 209
>gb|CN817295.1|CN817295 HRO4454_D02_H04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_D02_H04, mRNA sequence
Length = 375
Score = 23.5 bits (45), Expect(2) = 4.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / -2
Query: 41 PSRSREAVWR*CCPT*KG 94
P RSR R CCP *+G
Sbjct: 317 PCRSRRTGRRSCCP**RG 264
Score = 19.4 bits (36), Expect(2) = 4.6
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2 / -2
Query: 98 CGRMKSDPRWRSRCLKGAGSTSQSITS 178
C R + P W + +G+ S++ S
Sbjct: 194 CARTRRCPPWSATASPRSGTPSRTARS 114
>gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B05_C10, mRNA sequence
Length = 838
Score = 26.3 bits (51), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1 / -1
Query: 217 LQLAKLNSNVLQLHHQQELKILTRWW 294
L L +LNSNVLQ +++I+ W
Sbjct: 424 LNLPQLNSNVLQAVKSIDVRIILEIW 347
>gb|CN814878.1|CN814878 HRO4503_E02_J03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E02_J03, mRNA sequence
Length = 424
Score = 26.3 bits (51), Expect = 4.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1 / -2
Query: 502 ESWDPKGAQDLPGC 543
E W P G LPGC
Sbjct: 159 EGWTPSGCCSLPGC 118
>gb|CN814901.1|CN814901 HRO4503_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G03_N05, mRNA sequence
Length = 675
Score = 26.3 bits (51), Expect = 4.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1 / -3
Query: 502 ESWDPKGAQDLPGC 543
E W P G LPGC
Sbjct: 490 EGWTPSGCCSLPGC 449
>gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_D03_G05, mRNA sequence
Length = 636
Score = 26.3 bits (51), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1 / -2
Query: 217 LQLAKLNSNVLQLHHQQELKILTRWW 294
L L +LNSNVLQ +++I+ W
Sbjct: 203 LNLPQLNSNVLQAVKSIDVRIILEIW 126
>gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_F11_K22, mRNA sequence
Length = 753
Score = 26.3 bits (51), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1 / -2
Query: 217 LQLAKLNSNVLQLHHQQELKILTRWW 294
L L +LNSNVLQ +++I+ W
Sbjct: 356 LNLPQLNSNVLQAVKSIDVRIILEIW 279
>gb|CN815758.1|CN815758 HRO4510_B10_C20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_B10_C20, mRNA sequence
Length = 770
Score = 26.3 bits (51), Expect = 4.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / -1
Query: 326 KGSFDPICISSHHLVRIFSS 267
KG +DP+C S+H V F S
Sbjct: 515 KGYWDPLCQSTHCCVSFFIS 456
>gb|CN815950.1|CN815950 HRO4515_C05_F09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_C05_F09, mRNA sequence
Length = 511
Score = 26.3 bits (51), Expect = 4.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1 / +1
Query: 435 CHDGDNHCQYYP 400
CH G NHC+ P
Sbjct: 49 CHQGQNHCRNMP 84
>gb|CN816257.1|CN816257 HRO4518_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_F11_K22, mRNA sequence
Length = 879
Score = 26.3 bits (51), Expect = 4.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1 / +3
Query: 435 CHDGDNHCQYYP 400
CH G NHC+ P
Sbjct: 399 CHQGQNHCRNMP 434
>gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H06_O11, mRNA sequence
Length = 856
Score = 26.3 bits (51), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1 / -1
Query: 217 LQLAKLNSNVLQLHHQQELKILTRWW 294
L L +LNSNVLQ +++I+ W
Sbjct: 502 LNLPQLNSNVLQAVKSIDVRIILEIW 425
>gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C08_F16, mRNA sequence
Length = 598
Score = 26.3 bits (51), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1 / -2
Query: 217 LQLAKLNSNVLQLHHQQELKILTRWW 294
L L +LNSNVLQ +++I+ W
Sbjct: 144 LNLPQLNSNVLQAVKSIDVRIILEIW 67
>gb|CN817667.1|CN817667 HRO4463_A06_A11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_A06_A11, mRNA sequence
Length = 372
Score = 26.3 bits (51), Expect = 4.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1 / -2
Query: 502 ESWDPKGAQDLPGC 543
E W P G LPGC
Sbjct: 137 EGWTPSGCCSLPGC 96
>gb|CN818255.1|CN818255 HRO4470_D11_H22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_D11_H22, mRNA sequence
Length = 687
Score = 26.3 bits (51), Expect = 4.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3 / -1
Query: 525 SRPPRLHEICSREDIG*LPDHYK 593
SR +L + CSR+ + L DHY+
Sbjct: 171 SRGEKLAQTCSRDPLHLLHDHYR 103
>gb|CN818740.1|CN818740 HRO4468_B09_C18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_B09_C18, mRNA sequence
Length = 426
Score = 26.3 bits (51), Expect = 4.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1 / -2
Query: 502 ESWDPKGAQDLPGC 543
E W P G LPGC
Sbjct: 179 EGWTPSGCCSLPGC 138
>gb|CN819477.1|CN819477 HRO4406_E04_I08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E04_I08, mRNA
sequence
Length = 711
Score = 26.3 bits (51), Expect = 4.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1 / -3
Query: 61 RLEMMLPYVKGPLWAHEVRS 120
RLE ++P++K P + H + S
Sbjct: 376 RLESLIPFIKRPFFHHIIES 317
>gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_E12_J23, mRNA
sequence
Length = 807
Score = 26.3 bits (51), Expect = 4.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1 / +2
Query: 217 LQLAKLNSNVLQLHHQQELKILTRWW 294
L L +LNSNVLQ +++I+ W
Sbjct: 449 LNLPQLNSNVLQAVKSIDVRIILEIW 526
>gb|CN814958.1|CN814958 HRO4504_C12_F24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C12_F24, mRNA sequence
Length = 515
Score = 25.8 bits (50), Expect = 6.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3 / +2
Query: 100 TMALSRRAASSPDGFSRTRWLH 35
T +LSRR SP + + RW H
Sbjct: 101 TSSLSRRNLRSPGFYWQLRWFH 166
>gb|CN815940.1|CN815940 HRO4515_B07_D13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B07_D13, mRNA sequence
Length = 817
Score = 25.8 bits (50), Expect = 6.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -1
Query: 286 RWWEDMQIGSKLPFARD 336
RWW + + ++P ARD
Sbjct: 70 RWWMSLGLAQEIPAARD 20
>gb|CN816142.1|CN816142 HRO4517_D12_G23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_D12_G23, mRNA sequence
Length = 829
Score = 25.8 bits (50), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2 / -3
Query: 506 LSMQLVSISHSCGVAKESKISSKSVTMAI 420
LS + +SIS SC + S SKS ++++
Sbjct: 578 LSSEKISISASCSLVAVSSCLSKSSSLSV 492
>gb|CN818654.1|CN818654 HRO4467_E10_I19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_E10_I19, mRNA sequence
Length = 842
Score = 25.8 bits (50), Expect = 6.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2 / +2
Query: 173 TSMRMRQVERCMRRYCNLPS*TPT 244
+S + Q+++ +R CN P+ TPT
Sbjct: 446 SSWMLLQMDQLAKRVCNQPNGTPT 517
>gb|CN820532.1|CN820532 HRO4413_D12_G23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D12_G23, mRNA
sequence
Length = 693
Score = 25.8 bits (50), Expect = 6.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1 / +1
Query: 316 KLPFARDRIVECFLWILGVYYEPC 387
K+ F RD I F W+ G PC
Sbjct: 124 KVGFCRDEIQLVFSWL*GFVCSPC 195
>gb|M18822.1|ASTPHT3A Avena sativa type 3 phytochrome gene (phy3), complete cds
Length = 6746
Score = 25.8 bits (50), Expect = 6.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2 / +1
Query: 155 ILPLLGSGISSEDLTSCAHNGPFT*GSIISRRLLANAMASSSIVSP 18
+LP+L +G + C H P S+++ + L + + S + P
Sbjct: 2374 LLPVLPAGTARAPRQGC*HRQPLMPSSMLNMKNLVTPLTTPSWLKP 2511
>emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3)
Length = 3696
Score = 25.8 bits (50), Expect = 6.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2 / +2
Query: 155 ILPLLGSGISSEDLTSCAHNGPFT*GSIISRRLLANAMASSSIVSP 18
+LP+L +G + C H P S+++ + L + + S + P
Sbjct: 74 LLPVLPAGTARAPKQGC*HRQPLMPSSMLNMKNLVTPLTTPSWLKP 211
>emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochrome (AP5)
Length = 1623
Score = 25.8 bits (50), Expect = 6.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2 / +3
Query: 155 ILPLLGSGISSEDLTSCAHNGPFT*GSIISRRLLANAMASSSIVSP 18
+LP+L +G + C H P S+++ + L + + S + P
Sbjct: 153 LLPVLPAGTARAPRQGC*HRQPLMPSSMLNMKNLVTPLTTPSWLKP 290
>emb|CQ798732.1| Sequence 1 from Patent EP1411127
Length = 3390
Score = 25.8 bits (50), Expect = 6.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2 / +2
Query: 155 ILPLLGSGISSEDLTSCAHNGPFT*GSIISRRLLANAMASSSIVSP 18
+LP+L +G + C H P S+++ + L + + S + P
Sbjct: 17 LLPVLPAGTARAPRQGC*HRQPLMPSSMLNMKNLVTPLTTPSWLKP 154
>gb|BE439286.1|BE439286 CDO506_WHE04G12F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO506_WHE04G12, mRNA sequence
Length = 347
Score = 25.4 bits (49), Expect = 9.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2 / -2
Query: 242 LEFSLASCSTFSCSVPLVSYAWM*YFD 162
L F L +C PL+S+ WM + D
Sbjct: 226 LPFVLCNCYRGQSFAPLISWNWMMFCD 146
>gb|CN814867.1|CN814867 HRO4503_D02_H03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D02_H03, mRNA sequence
Length = 577
Score = 25.4 bits (49), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3 / -3
Query: 112 LHAPTMALSRRAASSPDGFSRTRWLHRVLSPH 17
LHAP A + + S P+ + R +HR H
Sbjct: 509 LHAPQAAWAHISCSRPNAYLYVRSVHRGKHTH 414
>gb|CN815821.1|CN815821 HRO4510_H02_O04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H02_O04, mRNA sequence
Length = 758
Score = 25.4 bits (49), Expect = 9.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1 / -2
Query: 88 KGPLWAHEVRSSLE 129
+GP W H+V+S LE
Sbjct: 625 QGPAWNHQVKSLLE 584
>gb|CN815975.1|CN815975 HRO4515_E06_J11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_E06_J11, mRNA sequence
Length = 308
Score = 25.4 bits (49), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3 / +2
Query: 112 LHAPTMALSRRAASSPDGFSRTRWLHRVLSPH 17
LHAP A + + S P+ + R +HR H
Sbjct: 8 LHAPQAAWAHISCSRPNAYLYVRSVHRGKHTH 103
>gb|CN816790.1|CN816790 HRO4524_G09_N18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_G09_N18, mRNA sequence
Length = 312
Score = 25.4 bits (49), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3 / -1
Query: 112 LHAPTMALSRRAASSPDGFSRTRWLHRVLSPH 17
LHAP A + + S P+ + R +HR H
Sbjct: 237 LHAPQAAWAHISCSRPNAYLYVRSVHRGKHTH 142
>gb|CN818807.1|CN818807 HRO4456_B05_C10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_B05_C10, mRNA sequence
Length = 818
Score = 25.4 bits (49), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3 / -1
Query: 390 FKSPDNIDNGYRHRDTLGRYFRFFRDPT 473
FKSP N + R L FFRD T
Sbjct: 740 FKSPTTNYNSHLRRQLL*MLIHFFRDRT 657
>gb|CN820861.1|CN820861 HRO4420_G09_N18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_G09_N18, mRNA
sequence
Length = 652
Score = 25.4 bits (49), Expect = 9.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2 / -3
Query: 611 SSRWSIFVMVW*LSNIF 561
S +W IF+++W S+IF
Sbjct: 191 SEQWEIFLILWEKSDIF 141
>gb|CN821650.1|CN821650 HRO4408_F10_L20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_F10_L20, mRNA
sequence
Length = 716
Score = 25.4 bits (49), Expect = 9.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2 / -1
Query: 236 FSLASCSTFSCSVPLVSYAW 177
FS CSTF C +P S +
Sbjct: 506 FS*VFCSTFHCFIPFTSITY 447
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,869,286
Number of Sequences: 8143
Number of extensions: 112388
Number of successful extensions: 1314
Number of sequences better than 10.0: 48
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 197302441
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)