TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAH4a02.xg.2.1
         (526 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815151.1|CN815151  HRO4506_D10_G20ZS5 Lib AA071E1X Aven...    99   7e-022
gb|CN818949.1|CN818949  HRO4474_G09_N18ZS5 Lib AA070E1X Aven...    95   8e-021

>gb|CN815151.1|CN815151 HRO4506_D10_G20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4506_D10_G20, mRNA sequence
          Length = 599

 Score = 98.6 bits (210), Expect = 7e-022
 Identities = 42/75 (56%), Positives = 53/75 (70%)
 Frame = +1 / +1

                                                                       
Query: 295 GNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVPA 474
           GN+++++K+VNFGS  VSL IS TGL+  I T GS  TVLTS  + DENSF  P+KVVP 
Sbjct: 43  GNSFLRVKIVNFGSDQVSLTISATGLQASINTLGSNATVLTSSNVMDENSFSNPNKVVPV 222

                          
Query: 475 ASPITNAGKQMGVIL 519
            S + NA +QM V L
Sbjct: 223 TSQLRNAAEQMQVTL 267



>gb|CN818949.1|CN818949 HRO4474_G09_N18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4474_G09_N18, mRNA sequence
          Length = 495

 Score = 95.0 bits (202), Expect = 8e-021
 Identities = 40/75 (53%), Positives = 52/75 (69%)
 Frame = +1 / +3

                                                                       
Query: 295 GNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVPA 474
           GN+++++K+VNFGS  VSL I+ TGL+  I   GS  TVLTS  + DENSF  P+KVVP 
Sbjct: 9   GNSFLRVKIVNFGSDQVSLTITATGLQASINALGSNATVLTSSNVMDENSFSNPNKVVPV 188

                          
Query: 475 ASPITNAGKQMGVIL 519
            S + NA +QM V L
Sbjct: 189 TSQLRNAAEQMQVTL 233



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.316    0.130    0.405 


Matrix: BLOSUM62
Number of Hits to DB: 7,131,929
Number of Sequences: 8143
Number of extensions: 106450
Number of successful extensions: 2061
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 41
effective length of database: 1,233,624
effective search space used: 164071992
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)