TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Aven... 28 0.66
gb|CN815648.1|CN815648 HRO4514_A02_A04ZS5 Lib AA071E1X Aven... 27 1.2
gb|CN818786.1|CN818786 HRO4468_E04_I08ZS5 Lib AA070E1X Aven... 27 1.2
gb|CN818046.1|CN818046 HRO4456_E03_I06ZS5 Lib AA070E1X Aven... 27 1.7
gb|CN816443.1|CN816443 HRO4520_G08_N16ZS5 Lib AA071E1X Aven... 25 4.4
gb|CN815967.1|CN815967 HRO4515_D10_H19ZS5 Lib AA071E1X Aven... 25 6.1
gb|CN818414.1|CN818414 HRO4469_B01_D01ZS5 Lib AA070E1X Aven... 25 6.1
gb|CN818816.1|CN818816 HRO4456_B02_C04ZS5 Lib AA070E1X Aven... 25 6.1
gb|CN821057.1|CN821057 HRO4427_A08_B15ZS5 Lib AA069E1X Aven... 25 6.1
gb|AF231336.1| Avena fatua clone p6-35f acetyl-CoA carboxyl... 25 6.1
gb|AF231337.1| Avena fatua clone p33-43f acetyl-CoA carboxy... 25 6.1
gb|CN815274.1|CN815274 HRO4507_H03_P05ZS5 Lib AA071E1X Aven... 23 6.1
gb|CN820051.1|CN820051 HRO4410_E10_I20ZS5 Lib AA069E1X Aven... 21 7.8
gb|CN819903.1|CN819903 HRO4407_F03_L05ZS5 Lib AA069E1X Aven... 21 8.2
gb|CN819281.1|CN819281 HRO4452_B09_C18ZS5 Lib AA070E1X Aven... 24 8.3
gb|AY618698.1| Avena prostrata strain CC7060 beta-amyrin sy... 24 8.3
gb|CN815858.1|CN815858 HRO4511_C07_F13ZS5 Lib AA071E1X Aven... 24 8.3
gb|CN818359.1|CN818359 HRO4469_F04_L07ZS5 Lib AA070E1X Aven... 24 8.3
gb|CN818417.1|CN818417 HRO4469_B04_D07ZS5 Lib AA070E1X Aven... 24 8.3
gb|CN818798.1|CN818798 HRO4456_C01_E02ZS5 Lib AA070E1X Aven... 24 8.3
gb|CN819951.1|CN819951 HRO4409_A09_A17ZS5 Lib AA069E1X Aven... 24 8.3
gb|CN820139.1|CN820139 HRO4411_F02_L03ZS5 Lib AA069E1X Aven... 24 8.3
gb|CN820572.1|CN820572 HRO4413_H12_O23ZS5 Lib AA069E1X Aven... 24 8.3
>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F11_K22, mRNA sequence
Length = 584
Score = 28.1 bits (55), Expect = 0.66
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3 / -1
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTSVL 140
L H + GV+H L EG+ AKP T+ L
Sbjct: 116 LAVHALDGVAHGLLRGEGDEAKPTGTASL 30
>gb|CN815648.1|CN815648 HRO4514_A02_A04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A02_A04, mRNA sequence
Length = 532
Score = 27.2 bits (53), Expect = 1.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2 / -1
Query: 5 LYHGKHICWPTPDSSMVVLSQCHWCFTFLSIS 100
L H H PTP + SQ CF FL S
Sbjct: 253 LLHDCHSSPPTPKLPKMYCSQTEMCFLFLRSS 158
>gb|CN818786.1|CN818786 HRO4468_E04_I08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_E04_I08, mRNA sequence
Length = 465
Score = 27.2 bits (53), Expect = 1.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3 / -3
Query: 6 CITGSTSAGLHQILPWLYYHNVIGV 80
C +GLHQ++P HN + V
Sbjct: 304 CCVPEAISGLHQVMPSKIRHNAVSV 230
>gb|CN818046.1|CN818046 HRO4456_E03_I06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_E03_I06, mRNA sequence
Length = 696
Score = 26.7 bits (52), Expect = 1.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1 / +3
Query: 40 RFFHGCIITMSLVFHISF 93
R FH IT SLV H+SF
Sbjct: 174 RLFHAITITDSLVRHLSF 227
>gb|CN816443.1|CN816443 HRO4520_G08_N16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_G08_N16, mRNA sequence
Length = 830
Score = 25.4 bits (49), Expect = 4.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1 / -3
Query: 25 LLAYTRFFHGCIITMSLV 78
L+A+ FF C+I+ SLV
Sbjct: 582 LIAFLHFFCSCVISSSLV 529
>gb|CN815967.1|CN815967 HRO4515_D10_H19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D10_H19, mRNA sequence
Length = 600
Score = 24.9 bits (48), Expect = 6.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3 / +3
Query: 56 QPWKNLV*ASRCAS 15
QPW+N++ S CA+
Sbjct: 120 QPWRNIILISSCAA 161
>gb|CN818414.1|CN818414 HRO4469_B01_D01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_B01_D01, mRNA sequence
Length = 581
Score = 24.9 bits (48), Expect = 6.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2 / -2
Query: 44 SSMVVLSQCHWCFT 85
S + +L CHWC T
Sbjct: 202 SVLSILMACHWCHT 161
>gb|CN818816.1|CN818816 HRO4456_B02_C04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_B02_C04, mRNA sequence
Length = 696
Score = 24.9 bits (48), Expect = 6.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3 / +3
Query: 36 HQILPWLYYHNVIGVSHFFLL 98
H LPW ++ + FFLL
Sbjct: 48 HMSLPWQFHQTICSSLSFFLL 110
>gb|CN821057.1|CN821057 HRO4427_A08_B15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_A08_B15, mRNA
sequence
Length = 512
Score = 24.9 bits (48), Expect = 6.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1 / +1
Query: 124 AGFAASPSTNRKKC 83
AG+A SP+ +RK+C
Sbjct: 199 AGYADSPACSRKRC 240
>gb|AF231336.1| Avena fatua clone p6-35f acetyl-CoA carboxylase (ACC1) gene, ACC1;2
allele, partial cds
Length = 2039
Score = 24.9 bits (48), Expect = 6.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1 / +3
Query: 55 NHGRIWCRPAD 23
NHG WC P+D
Sbjct: 771 NHGYKWCSPSD 803
>gb|AF231337.1| Avena fatua clone p33-43f acetyl-CoA carboxylase (ACC1) gene,
ACC1;2 allele, partial cds
Length = 2039
Score = 24.9 bits (48), Expect = 6.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1 / +3
Query: 55 NHGRIWCRPAD 23
NHG WC P+D
Sbjct: 771 NHGYKWCSPSD 803
>gb|CN815274.1|CN815274 HRO4507_H03_P05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_H03_P05, mRNA sequence
Length = 645
Score = 23.1 bits (44), Expect(2) = 6.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1 / +2
Query: 4 SVSREAHLLAYTRFFHGC 57
SV ++LL YT+ HGC
Sbjct: 101 SVCSCSYLLHYTKI*HGC 154
Score = 18.0 bits (33), Expect(2) = 6.1
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +1 / +1
Query: 142 NLFSRIWN 165
+LFS +WN
Sbjct: 499 DLFSTLWN 522
>gb|CN820051.1|CN820051 HRO4410_E10_I20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_E10_I20, mRNA
sequence
Length = 609
Score = 21.2 bits (40), Expect(2) = 7.8
Identities = 4/10 (40%), Positives = 8/10 (80%)
Frame = +2 / +2
Query: 2 DLYHGKHICW 31
++ +G H+CW
Sbjct: 209 EICYGMHVCW 238
Score = 19.4 bits (36), Expect(2) = 7.8
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +2 / +1
Query: 62 SQCHWCFTF 88
S C +CFT+
Sbjct: 427 SMCEYCFTW 453
>gb|CN819903.1|CN819903 HRO4407_F03_L05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_F03_L05, mRNA
sequence
Length = 649
Score = 21.2 bits (40), Expect(2) = 8.2
Identities = 4/10 (40%), Positives = 8/10 (80%)
Frame = +2 / +2
Query: 2 DLYHGKHICW 31
++ +G H+CW
Sbjct: 239 EICYGMHVCW 268
Score = 19.4 bits (36), Expect(2) = 8.2
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +2 / +1
Query: 62 SQCHWCFTF 88
S C +CFT+
Sbjct: 457 SMCEYCFTW 483
>gb|CN819281.1|CN819281 HRO4452_B09_C18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_B09_C18, mRNA sequence
Length = 836
Score = 24.4 bits (47), Expect = 8.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2 / +2
Query: 23 ICWPTPDSSMVVLSQCHWCFTFLSIS 100
+C P+ + S CH CF +S+S
Sbjct: 140 VCLPSKRDDDLHSSFCHCCF*IISLS 217
>gb|AY618698.1| Avena prostrata strain CC7060 beta-amyrin synthase gene, complete cds
Length = 2274
Score = 24.4 bits (47), Expect = 8.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3 / -3
Query: 72 IGVSHFFLLVEGEAAKPAXTSVLESIQP 155
+G SH FL AA T VL +QP
Sbjct: 2155 VGGSHLFLAAYSLAALQHYTVVLGHVQP 2072
>gb|CN815858.1|CN815858 HRO4511_C07_F13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_C07_F13, mRNA sequence
Length = 614
Score = 24.4 bits (47), Expect = 8.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3 / -3
Query: 72 IGVSHFFLLVEGEAAKPAXTSVLESIQP 155
+G SH FL AA T VL +QP
Sbjct: 315 VGGSHLFLAAYSLAALQHYTVVLGHVQP 232
>gb|CN818359.1|CN818359 HRO4469_F04_L07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_F04_L07, mRNA sequence
Length = 563
Score = 24.4 bits (47), Expect = 8.3
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +3 / +2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGV 80
+ ++ +T A +HQ L W +N++ +
Sbjct: 98 LSLSKATMAKVHQNLAWAVAYNIVAI 175
>gb|CN818417.1|CN818417 HRO4469_B04_D07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_B04_D07, mRNA sequence
Length = 457
Score = 24.4 bits (47), Expect = 8.3
Identities = 6/26 (23%), Positives = 14/26 (53%)
Frame = +1 / -3
Query: 10 SREAHLLAYTRFFHGCIITMSLVFHI 87
S H+ TR+ +GC++ + + +
Sbjct: 170 SHVTHIFTSTRYGYGCVVVLPYITEV 93
>gb|CN818798.1|CN818798 HRO4456_C01_E02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_C01_E02, mRNA sequence
Length = 628
Score = 24.4 bits (47), Expect = 8.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 33 LHQILPWLYYHNV 71
+H ILP LYYH V
Sbjct: 534 VHAILPDLYYHAV 572
>gb|CN819951.1|CN819951 HRO4409_A09_A17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_A09_A17, mRNA
sequence
Length = 651
Score = 24.4 bits (47), Expect = 8.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +2 / +2
Query: 8 YHGKHICWPTPDSSMVVLSQCH 73
+ +H C+P +V+L CH
Sbjct: 440 FSSEHFCYPVLIIQVVILCGCH 505
>gb|CN820139.1|CN820139 HRO4411_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_F02_L03, mRNA
sequence
Length = 404
Score = 24.4 bits (47), Expect = 8.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 33 LHQILPWLYYHNV 71
+H ILP LYYH V
Sbjct: 295 VHAILPDLYYHAV 333
>gb|CN820572.1|CN820572 HRO4413_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_H12_O23, mRNA
sequence
Length = 590
Score = 24.4 bits (47), Expect = 8.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +2 / +3
Query: 8 YHGKHICWPTPDSSMVVLSQCH 73
+ +H C+P +V+L CH
Sbjct: 459 FSSEHFCYPVLIIQVVILCGCH 524
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,652,377
Number of Sequences: 8143
Number of extensions: 23973
Number of successful extensions: 1589
Number of sequences better than 10.0: 24
length of database: 1,567,487
effective HSP length: 40
effective length of database: 1,241,767
effective search space used: 94374292
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)