TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF11h01.xg.2.1
         (328 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821264.1|CN821264  HRO4423_D02_H03ZS5 Lib AA069E1X Aven...    89   3e-033
gb|CN815287.1|CN815287  HRO4508_A06_B12ZS5 Lib AA071E1X Aven...    87   2e-032

>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
           sequence
          Length = 733

 Score = 89.0 bits (188), Expect(2) = 3e-033
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = -3 / +1

                                                                     
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
           R+ KYLNF+ P +   F+PNAC WAYG+N+FDL+ W+    T ++H++  MNED  LW
Sbjct: 139 RFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLKQWKNKDITGIYHKWQNMNEDRVLW 312




 Score = 65.7 bits (137), Expect(2) = 3e-033
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = -3 / +1

                                                   
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
           L  GLM+FY  T PLDKSWHV+GLGYNPSI    I +AAV
Sbjct: 325 LPPGLMTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAV 444



>gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4508_A06_B12, mRNA sequence
          Length = 570

 Score = 86.8 bits (183), Expect(2) = 2e-032
 Identities = 28/59 (47%), Positives = 42/59 (71%)
 Frame = -3 / +1

                                                                      
Query: 314 PRYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
           PR+ KYLNF+ P +   F+ NAC WAYG+N+FDLE W++   T ++H++  +NE+  LW
Sbjct: 25  PRFDKYLNFSNPNIAQNFDANACGWAYGMNMFDLEEWKKKDITGIYHRWQTLNENRLLW 201




 Score = 65.2 bits (136), Expect(2) = 2e-032
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = -3 / +1

                                                   
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
           L  GLM+FY  T PLDKSWHV+GLGYNP++    I SAAV
Sbjct: 214 LPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHSEIDSAAV 333



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 4,712,438
Number of Sequences: 8143
Number of extensions: 73395
Number of successful extensions: 5213
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 40
effective length of database: 1,241,767
effective search space used: 84440156
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)