TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE20c02.yg.2.1
(696 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Aven... 253 2e-068
gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Aven... 193 2e-050
emb|X78433.1|ASLBDG A.sativa L. mRNA for beta-D-glucosidase 115 2e-039
gb|CN818764.1|CN818764 HRO4468_D02_G04ZS5 Lib AA070E1X Aven... 154 1e-038
gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta... 109 1e-038
gb|CN821463.1|CN821463 HRO4425_F05_K09ZS5 Lib AA069E1X Aven... 116 3e-032
gb|CN821540.1|CN821540 HRO4426_E01_I02ZS5 Lib AA069E1X Aven... 116 3e-032
gb|CN819927.1|CN819927 HRO4407_H12_P23ZS5 Lib AA069E1X Aven... 116 3e-030
gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Aven... 108 1e-024
gb|CN821151.1|CN821151 HRO4428_A10_B20ZS5 Lib AA069E1X Aven... 91 1e-022
gb|CN820938.1|CN820938 HRO4421_F11_K21ZS5 Lib AA069E1X Aven... 91 1e-022
>gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G11_M21, mRNA
sequence
Length = 840
Score = 253 bits (547), Expect = 2e-068
Identities = 100/140 (71%), Positives = 113/140 (80%)
Frame = -3 / +3
Query: 436 VGIVLDFNWYEPFTNSTEDQKAAQRARDFHIGWFLDPLINGQYPKIMQDIVKDRLPSFTP 257
VGIVLDFNWYE TNSTEDQ AAQRARDFHIGWF+DPLING YP+IMQD+VK+RLP FTP
Sbjct: 12 VGIVLDFNWYEALTNSTEDQAAAQRARDFHIGWFVDPLINGHYPQIMQDLVKERLPRFTP 191
Query: 256 EQAKLVKGSSDYFGINQYTTYYIADQQTPPQGPPSYSSDWGVQYYFQRNGVQIGQMAHSI 77
+QAKLVKGS+DY GINQYT Y+ Q+ Q P SYS+DW V Y + RNG IG A+S
Sbjct: 192 DQAKLVKGSADYIGINQYTASYMKGQKLLQQTPTSYSADWQVTYAYARNGKPIGPKANSD 371
Query: 76 WLYIVPSGMYGVVNYLKEKY 17
WLYI P GMYG VNY+K+KY
Sbjct: 372 WLYIAPFGMYGCVNYIKQKY 431
Score = 144 bits (309), Expect(2) = 1e-041
Identities = 72/102 (70%), Positives = 76/102 (74%)
Frame = +3 / -3
Query: 132 TPQSDE*LGGPCGGVC*SAM*YVVY*LIPK*SDEPLTSLACSGVKLGSRSFTMSCIIFGY 311
T QS E*L G C +* VY LIP *S EPLTSLA SGV LG+ SFT SCII G
Sbjct: 316 TCQSAE*LVGVCCSNFCPFI*LAVYWLIPI*SAEPLTSLA*SGVNLGNLSFTRSCIICG* 137
Query: 312 CPFINGSRNQPIWKSLALCAAF*SSVEFVKGSYQLKSRTIPT 437
CPFI+GS NQPIWKSLALCAA SSVEFV+ SYQLKSRTIPT
Sbjct: 136 CPFISGSTNQPIWKSLALCAAAWSSVEFVRASYQLKSRTIPT 11
Score = 132 bits (282), Expect(2) = 2e-034
Identities = 56/102 (54%), Positives = 69/102 (67%)
Frame = +2 / -2
Query: 125 ILDAPVGRVARWSLRRSLLICNVVCSILIDPEIV**ALD*LGLFRCETW*PVFHNVLHYL 304
I + P+ VA SL + L ++ S+L+DP IV *A D L R E P+FH VLHYL
Sbjct: 323 ISNLPISGVASGSLLQQFLSLHITSSVLVDPNIVC*AFDQFSLIRSEPGQPLFHKVLHYL 144
Query: 305 WILPIY*WIKKPTNMEVPGPLRCFLIFS*VCKRFIPVEVKNY 430
W++ IY*WI KPTNMEV G L C L+FS*VCK IP+EV+NY
Sbjct: 143 WVMSIY*WINKPTNMEVSGSLCCSLVFS*VCKSLIPIEVQNY 18
Score = 108 bits (230), Expect = 1e-024
Identities = 61/141 (43%), Positives = 80/141 (56%)
Frame = -2 / +2
Query: 440 QGRDSS*LQLV*TFYKLN*RSKSSAKGQGLPYWLVS*SINKWAISKDNARHCERPATKFH 261
+G +SS LQLV* YKLN*R S K Q LPYWLV *S NKW + +NAR CER + H
Sbjct: 8 RGWNSSGLQLV*GSYKLN*RPSCSTKSQRLPYWLVC*STNKWTLPTNNARPCEREVAQVH 187
Query: 260 T*TGQASQGLIRLFRDQSIYYILHCRSTNSSAGTTELLVRLGRPILLSKEWRANWTDGAL 81
+*+ Q L RL+ DQ I+ L+ + ++A + LL L + + W N T G
Sbjct: 188 S*SS*TGQRLSRLYWDQPIHC*LYEGTEIAAADSH*LLR*LAGYLCICT*WETNRT*GKF 367
Query: 80 NLALHRPIGHVWSRELPKGKV 18
LALHR + V EL + +V
Sbjct: 368 *LALHRSVWDVRMCELHQAEV 430
Score = 40.5 bits (82), Expect(2) = 1e-041
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3 / -3
Query: 18 YFSFR*FTTPYMPDGTM*SQIECAICPICTP 110
YF *FT PY+P+G M*SQ E A+ PI P
Sbjct: 430 YFCLM*FTHPYIPNGAM*SQSEFALGPIGFP 338
Score = 28.6 bits (56), Expect(2) = 2e-034
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2 / -2
Query: 17 VLFL*VVHDSIHARWDDVKP 76
+L L V+H S+H + DVKP
Sbjct: 431 ILLLDVIHTSVHPKRSDVKP 372
>gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E10_J19, mRNA sequence
Length = 707
Score = 193 bits (417), Expect = 2e-050
Identities = 75/112 (66%), Positives = 88/112 (78%)
Frame = -3 / +2
Query: 352 FHIGWFLDPLINGQYPKIMQDIVKDRLPSFTPEQAKLVKGSSDYFGINQYTTYYIADQQT 173
FHIGWF+DPLING YP+IMQD+VK+RLP FTP+QAKLVKGS+DY GINQYT Y+ Q+
Sbjct: 11 FHIGWFVDPLINGHYPQIMQDLVKERLPRFTPDQAKLVKGSADYIGINQYTASYMKGQKL 190
Query: 172 PPQGPPSYSSDWGVQYYFQRNGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
Q P SYS+DW V Y + RNG IG A+S WLYI P GMYG VNY+K+KY
Sbjct: 191 LQQTPTSYSADWQVTYAYARNGKPIGPKANSDWLYIAPFGMYGCVNYIKQKY 346
Score = 91.8 bits (194), Expect(2) = 5e-026
Identities = 39/76 (51%), Positives = 49/76 (64%)
Frame = +2 / -2
Query: 125 ILDAPVGRVARWSLRRSLLICNVVCSILIDPEIV**ALD*LGLFRCETW*PVFHNVLHYL 304
I + P+ VA SL + L ++ S+L+DP IV *A D L R E P+FH VLHYL
Sbjct: 238 ISNLPISGVASGSLLQQFLSLHITSSVLVDPNIVC*AFDQFSLIRSEPGQPLFHKVLHYL 59
Query: 305 WILPIY*WIKKPTNME 352
W++ IY*WI KPTNME
Sbjct: 58 WVMSIY*WINKPTNME 11
Score = 91.3 bits (193), Expect(2) = 2e-022
Identities = 47/73 (64%), Positives = 50/73 (68%)
Frame = +3 / -3
Query: 132 TPQSDE*LGGPCGGVC*SAM*YVVY*LIPK*SDEPLTSLACSGVKLGSRSFTMSCIIFGY 311
T QS E*L G C +* VY LIP *S EPLTSLA SGV LG+ SFT SCII G
Sbjct: 231 TCQSAE*LVGVCCSNFCPFI*LAVYWLIPI*SAEPLTSLA*SGVNLGNLSFTRSCIICG* 52
Query: 312 CPFINGSRNQPIW 350
CPFI+GS NQPIW
Sbjct: 51 CPFISGSTNQPIW 13
Score = 40.5 bits (82), Expect(2) = 5e-026
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +3 / -3
Query: 18 YFSFR*FTTPYMPDGTM*SQIECAICPICTP 110
YF *FT PY+P+G M*SQ E A+ PI P
Sbjct: 345 YFCLM*FTHPYIPNGAM*SQSEFALGPIGFP 253
Score = 28.6 bits (56), Expect(2) = 2e-022
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2 / -2
Query: 17 VLFL*VVHDSIHARWDDVKP 76
+L L V+H S+H + DVKP
Sbjct: 346 ILLLDVIHTSVHPKRSDVKP 287
>emb|X78433.1|ASLBDG A.sativa L. mRNA for beta-D-glucosidase
Length = 1898
Score = 115 bits (246), Expect(4) = 2e-039
Identities = 46/109 (42%), Positives = 68/109 (62%)
Frame = -3 / +1
Query: 466 NKYQATQKGKVGIVLDFNWYEPFTNSTEDQKAAQRARDFHIGWFLDPLINGQYPKIMQDI 287
NK+ G++G+VLD YEP+ N+ DQ+A +RA DFHIGWFL+P++ G YP M+ +
Sbjct: 883 NKFYKGDDGQIGMVLDVMAYEPYGNNFLDQQAQERAIDFHIGWFLEPMVRGDYPFSMRSL 1062
Query: 286 VKDRLPSFTPEQAKLVKGSSDYFGINQYTTYYIADQQTPPQGPPSYSSD 140
V DRLP FT + + + S D+ GIN YT+ + P+ P ++D
Sbjct: 1063 VGDRLPFFTKSEQEKLVSSYDFVGINYYTSRFAKHIDISPEFIPKINTD 1209
Score = 34.1 bits (68), Expect(4) = 2e-039
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3 / +1
Query: 685 DYAXXXFKTXXXRVKXWXXLXEPRIVAXXGYDKGLXPP 572
DYA F+ +VK W EP GY GL P
Sbjct: 652 DYATVCFEHFGDKVKNWFTFNEPHSFCGLGYGTGLHAP 765
Score = 33.1 bits (66), Expect(4) = 2e-039
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3 / +1
Query: 526 PYIVVHNILLSHATAVARYRNKYQ 455
PYIV HN+LL+HA V Y Y+
Sbjct: 826 PYIVGHNLLLAHAETVDVYNKFYK 897
Score = 29.9 bits (59), Expect(4) = 2e-039
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3 / +1
Query: 112 NGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
NG+ IG ++Y P G+ ++ +KEKY
Sbjct: 1243 NGIPIGPDVGMYFIYSYPKGLKNILLRMKEKY 1338
>gb|CN818764.1|CN818764 HRO4468_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_D02_G04, mRNA sequence
Length = 718
Score = 154 bits (331), Expect = 1e-038
Identities = 62/121 (51%), Positives = 82/121 (67%)
Frame = -3 / +2
Query: 541 NSSTEPYIVVHNILLSHATAVARYRNKYQATQKGKVGIVLDFNWYEPFTNSTEDQKAAQR 362
NS+ EPYI HN++L+HA+A YR KYQA QKG VGI + W P TNST D A +R
Sbjct: 131 NSTVEPYIAAHNMILAHASATRLYREKYQAMQKGVVGINVYSFWTYPLTNSTADLAATKR 310
Query: 361 ARDFHIGWFLDPLINGQYPKIMQDIVKDRLPSFTPEQAKLVKGSSDYFGINQYTTYYIAD 182
+DF GW L+PL+ G YP++M+ V RLPSFT Q++ VKG+ D+ GIN Y + Y+ D
Sbjct: 311 YQDFMFGWTLEPLVFGDYPQVMKTNVGSRLPSFTESQSEFVKGAIDFIGINHYYSVYVND 490
Query: 181 Q 179
+
Sbjct: 491 R 493
>gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta subunit precursor (P60b) mRNA,
complete cds
Length = 1923
Score = 109 bits (233), Expect(4) = 1e-038
Identities = 43/108 (39%), Positives = 66/108 (61%)
Frame = -3 / +1
Query: 463 KYQATQKGKVGIVLDFNWYEPFTNSTEDQKAAQRARDFHIGWFLDPLINGQYPKIMQDIV 284
K+ G++G+V+D YEP+ N+ DQ+A +R+ DFHIGWFL+P++ G YP M+ +V
Sbjct: 889 KFYKGDDGQIGMVMDVMAYEPYGNNFVDQQAQERSIDFHIGWFLEPMVRGDYPFSMRSLV 1068
Query: 283 KDRLPSFTPEQAKLVKGSSDYFGINQYTTYYIADQQTPPQGPPSYSSD 140
DRLP FT + + + S D+ GIN YT + P+ P ++D
Sbjct: 1069 GDRLPFFTKSEQEKLVSSYDFVGINYYTARFSEHIDISPEIIPKLNTD 1212
Score = 35.0 bits (70), Expect(4) = 1e-038
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3 / +1
Query: 529 EPYIVVHNILLSHATAVARYRNKYQ 455
+PYIV HN+LL+HA V Y+ Y+
Sbjct: 826 QPYIVGHNLLLAHAETVDVYKKFYK 900
Score = 35.0 bits (70), Expect(4) = 1e-038
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -3 / +1
Query: 685 DYAXXXFKTXXXRVKXWXXLXEPRIVAXXGYDKGLXPPXXCT 560
DYA F+ +VK W EP Y GL P C+
Sbjct: 658 DYATVCFEHFGDKVKNWITFNEPHSFCGLAYGTGLHAPGLCS 783
Score = 30.4 bits (60), Expect(4) = 1e-038
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3 / +1
Query: 112 NGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
NG+ IG W+ P G+ ++ +KEKY
Sbjct: 1246 NGIPIGPDLGMYWILSYPKGLKDILLLMKEKY 1341
>gb|CN821463.1|CN821463 HRO4425_F05_K09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_F05_K09, mRNA
sequence
Length = 812
Score = 116 bits (248), Expect(3) = 3e-032
Identities = 46/109 (42%), Positives = 69/109 (63%)
Frame = -3 / +3
Query: 466 NKYQATQKGKVGIVLDFNWYEPFTNSTEDQKAAQRARDFHIGWFLDPLINGQYPKIMQDI 287
NK+ G++G+VLD YEP+ N+ DQ+A +RA DFHIGWFL+P++ G YP M+ +
Sbjct: 51 NKFYKGDDGQIGMVLDVMAYEPYGNNFLDQQAQERAIDFHIGWFLEPMVRGDYPFSMRSL 230
Query: 286 VKDRLPSFTPEQAKLVKGSSDYFGINQYTTYYIADQQTPPQGPPSYSSD 140
V DRLP FT + + + S D+ GIN YT+ + + P+ P ++D
Sbjct: 231 VGDRLPFFTKSEQEKLVSSYDFVGINYYTSRFAKHKDISPEIIPKKNTD 377
Score = 29.9 bits (59), Expect(3) = 3e-032
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3 / +3
Query: 112 NGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
NG+ IG ++Y P G+ ++ +KEKY
Sbjct: 411 NGIPIGPDVGMYFIYSYPKGLKNILLRMKEKY 506
Score = 24.4 bits (47), Expect(3) = 3e-032
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3 / +3
Query: 511 HNILLSHATAVARYRNKYQ 455
HN+LL+HA V Y Y+
Sbjct: 9 HNLLLAHAETVDVYNKFYK 65
>gb|CN821540.1|CN821540 HRO4426_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_E01_I02, mRNA
sequence
Length = 612
Score = 116 bits (248), Expect(3) = 3e-032
Identities = 46/109 (42%), Positives = 69/109 (63%)
Frame = -3 / +2
Query: 466 NKYQATQKGKVGIVLDFNWYEPFTNSTEDQKAAQRARDFHIGWFLDPLINGQYPKIMQDI 287
NK+ G++G+VLD YEP+ N+ DQ+A +RA DFHIGWFL+P++ G YP M+ +
Sbjct: 50 NKFYKGDDGQIGMVLDVMAYEPYGNNFLDQQAQERAIDFHIGWFLEPMVRGDYPFSMRSL 229
Query: 286 VKDRLPSFTPEQAKLVKGSSDYFGINQYTTYYIADQQTPPQGPPSYSSD 140
V DRLP FT + + + S D+ GIN YT+ + + P+ P ++D
Sbjct: 230 VGDRLPFFTKSEQEKLVSSYDFVGINYYTSRFAKHKDISPEIIPKKNTD 376
Score = 29.9 bits (59), Expect(3) = 3e-032
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3 / +2
Query: 112 NGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
NG+ IG ++Y P G+ ++ +KEKY
Sbjct: 410 NGIPIGPDVGMYFIYSYPKGLKNILLRMKEKY 505
Score = 24.4 bits (47), Expect(3) = 3e-032
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3 / +2
Query: 511 HNILLSHATAVARYRNKYQ 455
HN+LL+HA V Y Y+
Sbjct: 8 HNLLLAHAETVDVYNKFYK 64
>gb|CN819927.1|CN819927 HRO4407_H12_P23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_H12_P23, mRNA
sequence
Length = 832
Score = 116 bits (248), Expect(2) = 3e-030
Identities = 46/109 (42%), Positives = 69/109 (63%)
Frame = -3 / +2
Query: 466 NKYQATQKGKVGIVLDFNWYEPFTNSTEDQKAAQRARDFHIGWFLDPLINGQYPKIMQDI 287
NK+ G++G+VLD YEP+ N+ DQ+A +RA DFHIGWFL+P++ G YP M+ +
Sbjct: 53 NKFYKGDDGQIGMVLDVMAYEPYGNNFLDQQAQERAIDFHIGWFLEPMVRGDYPFSMRSL 232
Query: 286 VKDRLPSFTPEQAKLVKGSSDYFGINQYTTYYIADQQTPPQGPPSYSSD 140
V DRLP FT + + + S D+ GIN YT+ + + P+ P ++D
Sbjct: 233 VGDRLPFFTKSEQEKLVSSYDFVGINYYTSRFAKHKDISPEIIPKKNTD 379
Score = 29.9 bits (59), Expect(2) = 3e-030
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3 / +2
Query: 112 NGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
NG+ IG ++Y P G+ ++ +KEKY
Sbjct: 413 NGIPIGPDVGMYFIYSYPKGLKNILLRMKEKY 508
>gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_B09_D18, mRNA
sequence
Length = 678
Score = 108 bits (230), Expect = 1e-024
Identities = 42/74 (56%), Positives = 52/74 (70%)
Frame = -3 / +1
Query: 238 KGSSDYFGINQYTTYYIADQQTPPQGPPSYSSDWGVQYYFQRNGVQIGQMAHSIWLYIVP 59
+GS+DY GINQYT Y+ Q+ Q P SYS+DW V Y + RNG IG A+S WLY+ P
Sbjct: 7 EGSADYIGINQYTASYMKGQKLLQQTPTSYSADWQVTYAYARNGKPIGPKANSDWLYMAP 186
Query: 58 SGMYGVVNYLKEKY 17
GMYG VNY+K+KY
Sbjct: 187 FGMYGCVNYIKQKY 228
>gb|CN821151.1|CN821151 HRO4428_A10_B20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_A10_B20, mRNA
sequence
Length = 826
Score = 90.9 bits (192), Expect(2) = 1e-022
Identities = 35/81 (43%), Positives = 52/81 (64%)
Frame = -3 / +2
Query: 382 DQKAAQRARDFHIGWFLDPLINGQYPKIMQDIVKDRLPSFTPEQAKLVKGSSDYFGINQY 203
DQ+A +RA DFHIGWFL+P++ G YP M+ +V DRLP FT + + + S D+ GIN Y
Sbjct: 17 DQQAQERAIDFHIGWFLEPMVRGDYPFSMRSLVGDRLPFFTKSEQEKLVSSYDFVGINYY 196
Query: 202 TTYYIADQQTPPQGPPSYSSD 140
T+ + + P+ P ++D
Sbjct: 197 TSRFAKHKDISPEIIPKKNTD 259
Score = 29.9 bits (59), Expect(2) = 1e-022
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3 / +2
Query: 112 NGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
NG+ IG ++Y P G+ ++ +KEKY
Sbjct: 293 NGIPIGPDVGMYFIYSYPKGLKNILLRMKEKY 388
>gb|CN820938.1|CN820938 HRO4421_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_F11_K21, mRNA
sequence
Length = 808
Score = 90.9 bits (192), Expect(2) = 1e-022
Identities = 35/81 (43%), Positives = 52/81 (64%)
Frame = -3 / +3
Query: 382 DQKAAQRARDFHIGWFLDPLINGQYPKIMQDIVKDRLPSFTPEQAKLVKGSSDYFGINQY 203
DQ+A +RA DFHIGWFL+P++ G YP M+ +V DRLP FT + + + S D+ GIN Y
Sbjct: 12 DQQAQERAIDFHIGWFLEPMVRGDYPFSMRSLVGDRLPFFTKSEQEKLVSSYDFVGINYY 191
Query: 202 TTYYIADQQTPPQGPPSYSSD 140
T+ + + P+ P ++D
Sbjct: 192 TSRFAKHKDISPEIIPKKNTD 254
Score = 29.9 bits (59), Expect(2) = 1e-022
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3 / +3
Query: 112 NGVQIGQMAHSIWLYIVPSGMYGVVNYLKEKY 17
NG+ IG ++Y P G+ ++ +KEKY
Sbjct: 288 NGIPIGPDVGMYFIYSYPKGLKNILLRMKEKY 383
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,642,086
Number of Sequences: 8143
Number of extensions: 108650
Number of successful extensions: 1046
Number of sequences better than 1.0e-020: 12
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 231615909
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)