TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= L46398.2.1
         (1263 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY597512.1|  Avena sativa leafy hull sterile 1 (LHS1) mRN...   102   2e-050

>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
          Length = 904

 Score =  102 bits (217), Expect(3) = 2e-050
 Identities = 42/102 (41%), Positives = 67/102 (65%)
 Frame = +1 / +1

                                                                       
Query: 424 NAQDSNNSALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECA 603
           N      + L E++  Y+E  KL+ + E LQ +QR++LGEDLGPLS+KEL Q+E Q++ +
Sbjct: 190 NYNSQEAAPLVENEINYREYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIESQIDVS 369

                                                     
Query: 604 LSQARQRKTQVMMEQVEELRRTERHLGEMNRQLKHKLEAEGC 729
           L   R RK QV+++Q+ +L+  E+ L + N+ L+ KL+   C
Sbjct: 370 LKHIRSRKNQVLLDQLFDLKSKEQELQDQNKDLRKKLQEMSC 495




 Score =  100 bits (214), Expect(3) = 2e-050
 Identities = 42/50 (84%), Positives = 48/50 (96%)
 Frame = +1 / +1

                                                             
Query: 232 IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
           IENKI+RQVTF+KRRNGLLKKAYELS+LCDAE ALIIFSGRG+L+EF S+
Sbjct: 1   IENKISRQVTFAKRRNGLLKKAYELSLLCDAEDALIIFSGRGRLFEFSSS 150




 Score = 29.9 bits (59), Expect(3) = 2e-050
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1 / +1

                                
Query: 376 SAGVTKTLERYQHCCYNAQDS 438
           S+ + KTLERY+ C YN+Q++
Sbjct: 148 SSCMYKTLERYRTCNYNSQEA 210



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 14,638,936
Number of Sequences: 8143
Number of extensions: 225374
Number of successful extensions: 1108
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 454657320
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)