TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L18925.2.1
(1221 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRN... 98 1e-038
>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
Length = 904
Score = 98.2 bits (208), Expect(2) = 1e-038
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = -1 / +1
Query: 1074 IENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATVERYK 895
IEN SRQVTF KRRNGLLKKAYELS+LCDAE ALI+FS RGRL+E++++S
Sbjct: 1 IENKISRQVTFAKRRNGLLKKAYELSLLCDAEDALIIFSGRGRLFEFSSSSCMYKTLERY 180
Query: 894 KAHTVGSSSGPPLLEH 847
+ S PL+E+
Sbjct: 181 RTCNYNSQEAAPLVEN 228
Score = 77.6 bits (163), Expect(2) = 1e-038
Identities = 29/82 (35%), Positives = 59/82 (71%)
Frame = -1 / +1
Query: 825 QESAKLRNQIQMLQNTNRHLVGDSVGNLSLKELKQLESRLEKGISKIRARKSELLAAEIS 646
+E KL+ +++ LQ++ R+++G+ +G LS+KEL Q+ES+++ + IR+RK+++L ++
Sbjct: 241 REYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIESQIDVSLKHIRSRKNQVLLDQLF 420
Query: 645 YMAKRETELQNDHMTLRTKIEE 580
+ +E ELQ+ + LR K++E
Sbjct: 421 DLKSKEQELQDQNKDLRKKLQE 486
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 13,782,193
Number of Sequences: 8143
Number of extensions: 209579
Number of successful extensions: 1246
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 437728590
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)