TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= C4H2
(1794 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Aven... 63 1e-025
gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Aven... 43 2e-004
gb|CN817371.1|CN817371 HRO4465_D08_H15ZS5 Lib AA070E1X Aven... 28 0.53
gb|CN821323.1|CN821323 HRO4424_A06_B12ZS5 Lib AA069E1X Aven... 28 0.54
gb|CN814783.1|CN814783 HRO4502_D11_G22ZS5 Lib AA071E1X Aven... 31 0.68
gb|CN817162.1|CN817162 HRO4528_H09_P18ZS5 Lib AA071E1X Aven... 29 0.72
gb|CN815584.1|CN815584 HRO4513_C08_E15ZS5 Lib AA071E1X Aven... 30 1.3
gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Aven... 29 1.8
gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Aven... 29 1.8
gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Aven... 29 1.8
gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Aven... 29 1.8
gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Aven... 29 1.8
gb|CN821000.1|CN821000 HRO4422_D07_G14ZS5 Lib AA069E1X Aven... 29 1.8
gb|CN821044.1|CN821044 HRO4422_H07_O14ZS5 Lib AA069E1X Aven... 29 1.8
gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Aven... 29 2.4
gb|CN821239.1|CN821239 HRO4423_A10_B19ZS5 Lib AA069E1X Aven... 29 2.4
gb|AY038004.1| Avena sativa isolate Pc68LrkB2 sequence cont... 23 3.1
gb|AY038012.1| Avena sativa isolate Pc68LrkC4 sequence cont... 23 3.2
gb|CN818248.1|CN818248 HRO4470_E10_J20ZS5 Lib AA070E1X Aven... 26 3.3
gb|CN814910.1|CN814910 HRO4503_G12_N23ZS5 Lib AA071E1X Aven... 28 4.6
gb|CN818147.1|CN818147 HRO4471_E04_I07ZS5 Lib AA070E1X Aven... 28 4.6
emb|X69422.1|AFTETUBI A.fatua mRNA for tetraubiquitin 28 4.6
emb|AM071409.1| Avena sativa partial mRNA for CBF-like tran... 28 4.6
gb|CN816038.1|CN816038 HRO4516_C01_F02ZS5 Lib AA071E1X Aven... 28 6.3
gb|CN818229.1|CN818229 HRO4470_F12_L24ZS5 Lib AA070E1X Aven... 28 6.3
gb|CN818864.1|CN818864 HRO4473_E07_XXXZS5 Lib AA070E1X Aven... 28 6.3
gb|CN819515.1|CN819515 HRO4401_A10_A19ZS5 Lib AA069E1X Aven... 28 6.3
gb|CN818099.1|CN818099 HRO4471_H06_O11ZS5 Lib AA070E1X Aven... 26 7.3
gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Aven... 27 8.7
gb|CN816022.1|CN816022 HRO4516_A08_B16ZS5 Lib AA071E1X Aven... 27 8.7
gb|CN818287.1|CN818287 HRO4457_A06_B11ZS5 Lib AA070E1X Aven... 27 8.7
>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C02_E03, mRNA sequence
Length = 660
Score = 62.9 bits (131), Expect(3) = 1e-025
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +2 / +1
Query: 1115 ITEPDTHNLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWYLAN 1294
IT D L Y++ VIKE LRL PLL+P D ++ GY+IP + I +NA+ +++
Sbjct: 145 ITNSDLGELHYMRMVIKEVLRLHPPFPLLLPRETREDCEIMGYNIPKGTNIYINAFAISH 324
Query: 1295 NPDSW 1309
+P W
Sbjct: 325 DPVFW 339
Score = 48.3 bits (99), Expect(3) = 1e-025
Identities = 18/41 (43%), Positives = 31/41 (75%)
Frame = +2 / +1
Query: 980 ENINVAAIETTLWSIEWAVAELVNHPEIQQKLRQELDTVLG 1102
E++ AA ETT ++EW ++EL+N+PE+ K+++E+ VLG
Sbjct: 7 EDLFGAATETTSTALEWTMSELINNPEVMAKVQKEVREVLG 129
Score = 38.6 bits (78), Expect(3) = 1e-025
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2 / +1
Query: 1358 HVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQ 1507
+V +G F++ PFG GRR CP L+ +F+ P G+
Sbjct: 382 NVNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLPDGE 531
Score = 36.3 bits (73), Expect(2) = 8e-004
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1 / -2
Query: 1503 PGGGSSSKFWTRRPMVMPRMGRARMIPGQLLRPTPKGRYLKSLP 1372
P G SK+ R + + A+ IPG + RP PKG LK +P
Sbjct: 527 PSGSFQSKW*RRFAKAISMVDVAKNIPGHIRRPEPKGVNLKCVP 396
Score = 25.4 bits (49), Expect(2) = 8e-004
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1 / -2
Query: 1101 PSTVSSSCRSFCWISGWFTSSATAHSIDHSVVSIAA 994
PST +S + SG SS HS VVS+AA
Sbjct: 128 PSTSRTSFCTLAITSGLLMSSDIVHSKAVDVVSVAA 21
>gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_D10_H20, mRNA
sequence
Length = 379
Score = 42.8 bits (87), Expect = 2e-004
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -1 / -1
Query: 1560 FKMWRLNWPPFSVVSTLSCPGGGSSSKFWTRRPMVMPRMGRARMIPGQLLRPTPKG 1393
F + R++ S +ST G S SK++TR ++ A+ +PGQ+LRP P G
Sbjct: 172 FSLRRIDKLNTSFMSTSFFSAGSSQSKWYTRFASIISTATFAKFMPGQILRPDPNG 5
Score = 31.8 bits (63), Expect = 0.36
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2 / +3
Query: 1391 LPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQDKVDTTE 1528
+PFG GRR CP LV +F+ P + +VD E
Sbjct: 3 VPFGSGRRICPGINFANVAVEMMLANLVYHFDWELPAEKKEVDMKE 140
>gb|CN817371.1|CN817371 HRO4465_D08_H15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D08_H15, mRNA sequence
Length = 836
Score = 27.6 bits (54), Expect(2) = 0.53
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2 / +2
Query: 1370 NGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQ 1507
+ DFR++PF G R C +VQ ++ P Q
Sbjct: 410 SNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIVVQKMDIQLVPDQ 547
Score = 24.4 bits (47), Expect(2) = 0.53
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2 / +2
Query: 992 VAAIETTLWSIEWAVAELVNHPEIQQKLRQELDTVL 1099
VA ETT + W + L P ++ + E+D VL
Sbjct: 35 VAGHETTGSVLTWTIYLLSKDPAALRRAQDEVDRVL 142
>gb|CN821323.1|CN821323 HRO4424_A06_B12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A06_B12, mRNA
sequence
Length = 860
Score = 27.6 bits (54), Expect(2) = 0.54
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2 / +2
Query: 1370 NGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQ 1507
+ DFR++PF G R C +VQ ++ P Q
Sbjct: 635 SNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIVVQKMDIQLVPDQ 772
Score = 24.4 bits (47), Expect(2) = 0.54
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2 / +2
Query: 992 VAAIETTLWSIEWAVAELVNHPEIQQKLRQELDTVL 1099
VA ETT + W + L P ++ + E+D VL
Sbjct: 260 VAGHETTGSVLTWTIYLLSKDPAALRRAQDEVDRVL 367
>gb|CN814783.1|CN814783 HRO4502_D11_G22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_D11_G22, mRNA sequence
Length = 479
Score = 30.9 bits (61), Expect = 0.68
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1 / +1
Query: 34 RKDSKQALPPSPPRRHGPSLRGEAPG 111
R+ +A PP RHG LR +APG
Sbjct: 172 RRHLHRARPPQDRHRHGRRLRAQAPG 249
>gb|CN817162.1|CN817162 HRO4528_H09_P18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_H09_P18, mRNA sequence
Length = 617
Score = 28.6 bits (56), Expect(2) = 0.72
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1 / +3
Query: 321 TTTRLRCPIRRRKTSPNLRDSAARLRWLRSSPTCSQFP 208
TT L P R+ P+ + AAR S +CS FP
Sbjct: 312 TTASLSWPAWLRRLQPSSQRGAARASHRSRSSSCSTFP 425
Score = 22.6 bits (43), Expect(2) = 0.72
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1 / +3
Query: 465 ILRQWSPYTVNTMSCPLSVKMSKTTL 388
ILR P T+ P+S+ S +TL
Sbjct: 87 ILRTGEPATLQIFILPMSISASISTL 164
>gb|CN815584.1|CN815584 HRO4513_C08_E15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_C08_E15, mRNA sequence
Length = 812
Score = 29.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1 / +2
Query: 1518 STLSCPGGGSSSKFWTRRPMVMPRMGRARMIPGQ 1417
S+ SC S+ F P + PR+ R R+ PGQ
Sbjct: 695 SSGSCATASGSNLFNGSAPRLPPRISRVRLAPGQ 796
>gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B05_C10, mRNA sequence
Length = 838
Score = 29.5 bits (58), Expect = 1.8
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / -2
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 657 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSSFFFSASSKAAFSTSLCLAQVSSANA 478
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 477 LAKAASSVMRMLSN 436
>gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_D03_G05, mRNA sequence
Length = 636
Score = 29.5 bits (58), Expect = 1.8
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / -3
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 436 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSSFFFSASSKAAFSTSLCLAQVSSANA 257
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 256 LAKAASSVMRMLSN 215
>gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_F11_K22, mRNA sequence
Length = 753
Score = 29.5 bits (58), Expect = 1.8
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / -3
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 589 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSCFFFSASSKAAFSTSLCLAQVSSANA 410
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 409 LAKAASSVMRMLSN 368
>gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C08_F16, mRNA sequence
Length = 598
Score = 29.5 bits (58), Expect = 1.8
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / -3
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 377 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSCFFFSASSKAAFSTSLCLAQVSSANA 198
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 197 LAKAASSVMRMLSN 156
>gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_E12_J23, mRNA
sequence
Length = 807
Score = 29.5 bits (58), Expect = 1.8
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / +3
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 216 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSSFFFSASSKAAFSTSLCLAQVSSANA 395
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 396 LAKAASSVMRMLSN 437
>gb|CN821000.1|CN821000 HRO4422_D07_G14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D07_G14, mRNA
sequence
Length = 502
Score = 29.5 bits (58), Expect = 1.8
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / -3
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 278 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSCFFFSASSKAAFSTSLCLAQVSSANA 99
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 98 LAKAASSVMRMLSN 57
>gb|CN821044.1|CN821044 HRO4422_H07_O14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H07_O14, mRNA
sequence
Length = 502
Score = 29.5 bits (58), Expect = 1.8
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / -1
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 277 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSCFFFSASSKAAFSTSLCLAQVSSANA 98
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 97 LAKAASSVMRMLSN 56
>gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H06_O11, mRNA sequence
Length = 856
Score = 29.0 bits (57), Expect = 2.4
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = -1 / -2
Query: 1089 SSSCRSFCWISGWFTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCASSM*SMA 910
SSS +F +S W +S++++ S+ +A++ F S+ ++ + C A + A
Sbjct: 735 SSSDTAFSSLSSWLSSASSSSKSSSSLALLASSSSFFFSASSKAAFSTSLCLAQVSSANA 556
Query: 909 HLRPLLSVALVLAS 868
+ SV +L++
Sbjct: 555 LAKGASSVMRMLSN 514
>gb|CN821239.1|CN821239 HRO4423_A10_B19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_A10_B19, mRNA
sequence
Length = 472
Score = 29.0 bits (57), Expect = 2.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1 / +2
Query: 1578 HTMVECFKMWRLNWPPFSVVSTLSC 1504
H C+ + +WPP V++ L+C
Sbjct: 326 HKPAICYTSYHHHWPPLHVIACLAC 400
>gb|AY038004.1| Avena sativa isolate Pc68LrkB2 sequence containing transposon and
repetitive DNA linked to receptor kinase gene
Length = 3930
Score = 23.1 bits (44), Expect(2) = 3.1
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = -1 / -3
Query: 360 CVWSTSRASGGDETTTRLRCPIRRRKTSPNLRDSAARLRWLRSS 229
C W S + ++ R K NL D+ W+RSS
Sbjct: 823 C*WRRSP*RVSRHSKSKFSTDANRGKPESNLGDANNERDWIRSS 692
Score = 22.1 bits (42), Expect(2) = 3.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1 / -2
Query: 120 KRPTRSFSTKRRTMATGRRWREGL 49
K T S ST ++ RWR+GL
Sbjct: 575 KMHTCSTSTSTPSLVQQVRWRDGL 504
>gb|AY038012.1| Avena sativa isolate Pc68LrkC4 sequence containing retrotransposon
and repetitive DNA linked to receptor kinase gene
Length = 2184
Score = 23.1 bits (44), Expect(2) = 3.2
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = -1 / -2
Query: 360 CVWSTSRASGGDETTTRLRCPIRRRKTSPNLRDSAARLRWLRSS 229
C W S + ++ R K NL D+ W+RSS
Sbjct: 833 C*WRRSP*RVSRHSKSKFSTDANRGKPESNLGDANNERDWIRSS 702
Score = 22.1 bits (42), Expect(2) = 3.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1 / -1
Query: 120 KRPTRSFSTKRRTMATGRRWREGL 49
K T S ST ++ RWR+GL
Sbjct: 585 KMHTCSTSTSTPSLVQQVRWRDGL 514
>gb|CN818248.1|CN818248 HRO4470_E10_J20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_E10_J20, mRNA sequence
Length = 482
Score = 26.3 bits (51), Expect(2) = 3.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1 / -1
Query: 1263 LLSAGMSXPPSLASWRFMCGTSSGMAIRSRSVSLITACR*GRLCVSGSVI 1114
L+ AGMS PS+ G S +R SVS+ T+ * VS +++
Sbjct: 254 LICAGMSSGPSMVCLHGADGPSGTTRLRKVSVSVWTSGS*FSFRVSEALV 105
Score = 22.1 bits (42), Expect(2) = 3.3
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -3
Query: 508 HDLVGEEGH 482
HDLVG+ GH
Sbjct: 42 HDLVGDGGH 16
>gb|CN814910.1|CN814910 HRO4503_G12_N23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G12_N23, mRNA sequence
Length = 746
Score = 28.1 bits (55), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3 / -3
Query: 667 LEAPVEHDPVYVVVHHELQASAEHDSVGGR 578
L P++H PVY+V+ L E D V G+
Sbjct: 252 LGVPIDHQPVYLVLDLMLLGILERDVVLGQ 163
>gb|CN818147.1|CN818147 HRO4471_E04_I07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_E04_I07, mRNA sequence
Length = 357
Score = 28.1 bits (55), Expect = 4.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1 / +2
Query: 379 PHPQRGLRHLHGQGAGHGVHRVRRPLAQDAPHHDRALLH 495
PH QR R H + G+HR R L H R H
Sbjct: 11 PHVQRPRRLQHRRRPRLGIHRPHRRLLHPRHHQQRIRPH 127
>emb|X69422.1|AFTETUBI A.fatua mRNA for tetraubiquitin
Length = 1196
Score = 28.1 bits (55), Expect = 4.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3 / -3
Query: 76 DGAEMEGGLACCPFSLSHCFLC 11
D A +EG L C S SHC LC
Sbjct: 615 DAAGLEGCLPCPGSSPSHCRLC 550
>emb|AM071409.1| Avena sativa partial mRNA for CBF-like transcription factor (cbf4
gene)
Length = 848
Score = 28.1 bits (55), Expect = 4.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1 / +1
Query: 369 STPCVWSTSRASGGDETTTRLRCPIRRRKTSPNLRDSAARLRWLRSSPTCSQ 214
+T C + A+ R CP R S + R S R R++P CS+
Sbjct: 208 ATLCTAACVAAAATGGGCARCACPARAASVSGSARTSRPRPPRARTTPPCSR 363
>gb|CN816038.1|CN816038 HRO4516_C01_F02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_C01_F02, mRNA sequence
Length = 626
Score = 27.6 bits (54), Expect = 6.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1 / -2
Query: 1050 FTSSATAHSIDHSVVSIAATLMFSTMKSTLSSLISPFCCA 931
++ ++ + S+ T + + ++S LSS ISPFC A
Sbjct: 349 YSVKKSSWNFSDSIAGSLLTRLETCLRSELSSGISPFCMA 230
>gb|CN818229.1|CN818229 HRO4470_F12_L24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_F12_L24, mRNA sequence
Length = 705
Score = 27.6 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2 / +1
Query: 995 AAIETTLWSIEWAVAELVNHPEIQQKLRQEL 1087
A ETT + W + L +PE Q++LR+E+
Sbjct: 91 AGHETTSHLLTWTMFLLSVYPEWQERLREEV 183
>gb|CN818864.1|CN818864 HRO4473_E07_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_E07_XXX, mRNA sequence
Length = 597
Score = 27.6 bits (54), Expect = 6.3
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2 / +2
Query: 1370 NGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQ 1507
+ DFR++PF G R C +VQ ++ P Q
Sbjct: 104 SNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIVVQKMDIQLVPDQ 241
>gb|CN819515.1|CN819515 HRO4401_A10_A19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_A10_A19, mRNA
sequence
Length = 416
Score = 27.6 bits (54), Expect = 6.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1 / +2
Query: 418 GAGHGVHRVRRPLAQDAPHHDRALLH 495
GAG V R RP + PH R LLH
Sbjct: 44 GAGGLVPRAGRPHGRRRPHAHRLLLH 121
>gb|CN818099.1|CN818099 HRO4471_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_H06_O11, mRNA sequence
Length = 851
Score = 25.8 bits (50), Expect(2) = 7.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -1 / +3
Query: 441 TVNTMSCPLSVKMSKTTLRVREPNSTPCVWSTSRASGGDETTTRLRCPIRR 289
T +T S + T R + P WST+ + TT L CP R
Sbjct: 459 TPSTRRRRTSSRSCSTPPRSSSGPTRPARWSTTSSRTLSTTTRELHCPSTR 611
Score = 22.1 bits (42), Expect(2) = 7.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1 / +3
Query: 633 LLYIMSCRRRRSTIPSV 583
L+ + SC R+++T PS+
Sbjct: 9 LVTVSSCARKQNTHPSI 59
>gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D04_H07, mRNA sequence
Length = 721
Score = 27.2 bits (53), Expect = 8.7
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +1 / +1
Query: 373 RLPHPQRGLRHLHGQGAGHGVHRVRRPLAQDAPHHDRALLHQ 498
R P PQ+ H H Q R RR PHH LHQ
Sbjct: 46 RHPGPQQHPPHHHHQVQAPRPQRRRRRRPVRRPHHRPLPLHQ 171
>gb|CN816022.1|CN816022 HRO4516_A08_B16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A08_B16, mRNA sequence
Length = 602
Score = 27.2 bits (53), Expect = 8.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2 / -1
Query: 1223 DAKLGGYDIPAESKILVNAWYLANNPDSW 1309
D + GY +P S ++++ L NP W
Sbjct: 602 DTNVAGYRVPKGSHVILSRTGLGRNPAIW 516
>gb|CN818287.1|CN818287 HRO4457_A06_B11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_A06_B11, mRNA sequence
Length = 832
Score = 27.2 bits (53), Expect = 8.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1 / +1
Query: 351 STSRASGGDETTTRLRCPIRRRKTSPNLRDSAAR 250
++SRAS T+T +R RR+TSP S+AR
Sbjct: 664 TSSRASPTLTTSTSVRGRSGRRRTSPRTT*SSAR 765
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,824,544
Number of Sequences: 8143
Number of extensions: 158643
Number of successful extensions: 1161
Number of sequences better than 10.0: 32
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 662980704
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)