TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF332176.2.1
(912 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 103 1e-029
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 103 bits (220), Expect(2) = 1e-029
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = +2 / +1
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTNESGKTLVADQVIPADWQPDNVYSSIVQFE* 652
W PMRESWGSIWRMD+ LQ PFS+R+T++SGK LVA+ +IPA+W+P+ Y S VQF
Sbjct: 82 WAPMRESWGSIWRMDSNHRLQAPFSMRITSDSGKQLVANNIIPANWRPNTDYRSFVQFSS 261
Query: 653 *YMP 664
* P
Sbjct: 262 *ATP 273
Score = 41.4 bits (84), Expect(2) = 1e-029
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2 / +1
Query: 374 YLAVLVEYENGDGDVVQVDLMESSPDDGEP 463
YLAVL+EYE+ DGD+ QVD+ E++ P
Sbjct: 1 YLAVLIEYEDMDGDLTQVDMKEANSRSWAP 90
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,776,385
Number of Sequences: 8143
Number of extensions: 115362
Number of successful extensions: 941
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 316507880
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)