TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AF019146.2.1
         (1761 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820717.1|CN820717  HRO4416_G05_N10ZS5 Lib AA069E1X Aven...    68   1e-028

>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
           sequence
          Length = 644

 Score = 67.5 bits (141), Expect(3) = 1e-028
 Identities = 32/68 (47%), Positives = 40/68 (58%)
 Frame = +2 / -1

                                                                       
Query: 758 AFVFMIKNGGIDTEADYPFTGHDGTCDLKLKNTRVVSIDSFERVPINYERALQKAVAHQP 937
           A  ++ KNGGI TEADYP+ G  G CD        VS+ S   V  N E+ L +AVA QP
Sbjct: 584 AIFWIWKNGGITTEADYPYMGKKGVCDKTKLEHHTVSVLSVGYVSSNNEQKLMEAVAKQP 405

                   
Query: 938 VSASIEAS 961
           V+A IE +
Sbjct: 404 VTAVIEVA 381




 Score = 51.5 bits (106), Expect(3) = 1e-028
 Identities = 22/48 (45%), Positives = 26/48 (54%)
 Frame = +2 / -1

                                                            
Query: 1043 GYGSEGGKDYWIVKNSWGTQWGEAGYVRMARNVRVRPPSAGIAMEPLY 1186
            G  +  GK YWIVKNS GT +G  GY+   R V       GIA  P+Y
Sbjct: 296  GTDASTGKKYWIVKNSHGTSFGMGGYILFERGVTDSRGLCGIASSPVY 153




 Score = 41.4 bits (84), Expect(3) = 1e-028
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2 / -1

                                          
Query: 968  AFQLYSSGIFDGRCGTYLDHGVTVVGYGSE 1057
            +F  Y SG++ G CG   +H VT+VGYG++
Sbjct: 377  SFAKYKSGVYSGPCGYAYNHIVTIVGYGTD 288



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 13,400,162
Number of Sequences: 8143
Number of extensions: 162726
Number of successful extensions: 1363
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 649769132
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)