TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819954.1|CN819954 HRO4409_B01_C01ZS5 Lib AA069E1X Aven... 33 0.075
emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllid... 31 0.27
gb|CN815357.1|CN815357 HRO4508_G07_N14ZS5 Lib AA071E1X Aven... 30 0.37
gb|CN819162.1|CN819162 HRO4457_E01_J01ZS5 Lib AA070E1X Aven... 29 0.69
gb|CN814804.1|CN814804 HRO4502_F08_K16ZS5 Lib AA071E1X Aven... 29 0.95
gb|CN820274.1|CN820274 HRO4417_E07_I13ZS5 Lib AA069E1X Aven... 29 0.95
gb|CN820766.1|CN820766 HRO4414_E06_I12ZS5 Lib AA069E1X Aven... 29 0.95
gb|CN821144.1|CN821144 HRO4428_A03_B06ZS5 Lib AA069E1X Aven... 29 0.95
gb|CN817870.1|CN817870 HRO4462_E04_J08ZS5 Lib AA070E1X Aven... 29 1.3
gb|CN816585.1|CN816585 HRO4522_E01_I02ZS5 Lib AA071E1X Aven... 28 2.5
gb|CN818414.1|CN818414 HRO4469_B01_D01ZS5 Lib AA070E1X Aven... 28 2.5
gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Aven... 27 3.4
gb|CN818508.1|CN818508 HRO4466_E09_J18ZS5 Lib AA070E1X Aven... 27 3.4
gb|CN819872.1|CN819872 HRO4407_A11_B21ZS5 Lib AA069E1X Aven... 27 3.4
gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Aven... 27 3.4
gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Aven... 27 4.7
gb|CN815675.1|CN815675 HRO4514_C08_E16ZS5 Lib AA071E1X Aven... 27 4.7
gb|CN817979.1|CN817979 HRO4472_H11_O22ZS5 Lib AA070E1X Aven... 27 4.7
gb|CN819595.1|CN819595 HRO4402_A01_A02ZS5 Lib AA069E1X Aven... 27 4.7
gb|CN821632.1|CN821632 HRO4408_E03_J06ZS5 Lib AA069E1X Aven... 27 4.7
gb|CN821430.1|CN821430 HRO4425_C03_E05ZS5 Lib AA069E1X Aven... 27 4.8
gb|CN815473.1|CN815473 HRO4512_A09_B18ZS5 Lib AA071E1X Aven... 26 6.4
gb|CN819069.1|CN819069 HRO4469_A08_B15ZS5 Lib AA070E1X Aven... 26 6.4
gb|CN820525.1|CN820525 HRO4413_D04_G07ZS5 Lib AA069E1X Aven... 26 6.4
gb|U11693.1|ASU11693 Avena sativa victorin binding protein ... 26 6.4
gb|CN814877.1|CN814877 HRO4503_D12_H23ZS5 Lib AA071E1X Aven... 26 8.8
gb|CN818039.1|CN818039 HRO4472_D02_G04ZS5 Lib AA070E1X Aven... 26 8.8
>gb|CN819954.1|CN819954 HRO4409_B01_C01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_B01_C01, mRNA
sequence
Length = 542
Score = 32.7 bits (65), Expect = 0.075
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2 / -1
Query: 227 SLSSTLGCLFPCYTPSSLAPFPFVCTLGCF 138
S S+ G LFP +LA FPF+ L CF
Sbjct: 332 SRSTGFGLLFPIVQERNLALFPFLANLHCF 243
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase
Length = 1146
Score = 30.9 bits (61), Expect = 0.27
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1 / +1
Query: 385 WRWREAGRRPWMERDSARADAAYMRRAWPAGRT 483
WR R +G W S+R RRAW G T
Sbjct: 58 WRRRASGTWSWRAATSSRRPRPPRRRAWRTGAT 156
>gb|CN815357.1|CN815357 HRO4508_G07_N14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_G07_N14, mRNA sequence
Length = 457
Score = 30.4 bits (60), Expect = 0.37
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2 / -1
Query: 197 PCYTPSSLAPFPFVCTLGCF 138
P + P L PFP C+ GCF
Sbjct: 91 PSHHPLPLYPFPLACSHGCF 32
>gb|CN819162.1|CN819162 HRO4457_E01_J01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_E01_J01, mRNA sequence
Length = 676
Score = 29.5 bits (58), Expect = 0.69
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2 / -3
Query: 215 TLGCLFPCYTPSSLAPFPFVCTL 147
T C+ P Y S + FPF CT+
Sbjct: 200 TCACMIPWYCISLASTFPFFCTI 132
>gb|CN814804.1|CN814804 HRO4502_F08_K16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_F08_K16, mRNA sequence
Length = 662
Score = 29.0 bits (57), Expect = 0.95
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1 / +2
Query: 331 IQLLYAWVHTHTRQCAEIWRWREAGRR 411
IQ W +R C +WRW G +
Sbjct: 284 IQQQKRWTICRSRSCTRLWRWLRRGHQ 364
>gb|CN820274.1|CN820274 HRO4417_E07_I13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_E07_I13, mRNA
sequence
Length = 429
Score = 29.0 bits (57), Expect = 0.95
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1 / -3
Query: 370 QCAEIWRWREAGRRPW 417
+C WR RE RRPW
Sbjct: 79 RCRGSWRGREGARRPW 32
>gb|CN820766.1|CN820766 HRO4414_E06_I12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_E06_I12, mRNA
sequence
Length = 854
Score = 29.0 bits (57), Expect = 0.95
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2 / +3
Query: 206 CLFPCYTPSSLAPFPFVCTLGCFVT 132
C+ PC T S L FP + L C++T
Sbjct: 639 CIHPCGTFSILHNFPSMAVLFCWIT 713
>gb|CN821144.1|CN821144 HRO4428_A03_B06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_A03_B06, mRNA
sequence
Length = 714
Score = 29.0 bits (57), Expect = 0.95
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2 / +2
Query: 206 CLFPCYTPSSLAPFPFVCTLGCFVT 132
C+ PC T S L FP + L C++T
Sbjct: 599 CIHPCGTFSILHNFPSMAVLFCWIT 673
>gb|CN817870.1|CN817870 HRO4462_E04_J08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_E04_J08, mRNA sequence
Length = 317
Score = 28.6 bits (56), Expect = 1.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3 / -2
Query: 420 GERQRARRCCIYAARVAGR 476
G R +RRCC AAR GR
Sbjct: 253 GCRHESRRCCTVAARTHGR 197
>gb|CN816585.1|CN816585 HRO4522_E01_I02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_E01_I02, mRNA sequence
Length = 553
Score = 27.6 bits (54), Expect = 2.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1 / +1
Query: 391 WREAGRRPWMERDSARADAAYMRRAW 468
WR +GRR W +R R R W
Sbjct: 295 WRRSGRRHWPQRQR*RMRTPSRRSLW 372
>gb|CN818414.1|CN818414 HRO4469_B01_D01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_B01_D01, mRNA sequence
Length = 581
Score = 27.6 bits (54), Expect = 2.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2 / +1
Query: 479 RPAGHARRIYAASARALSLSIHGRRP 402
RP+G R+ A +R+LS+S+ RRP
Sbjct: 178 RPSGWKARMGAFMSRSLSVSMFRRRP 255
>gb|CN817952.1|CN817952 HRO4453_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C12_F23, mRNA sequence
Length = 469
Score = 27.2 bits (53), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1 / -1
Query: 687 TLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDR 568
TL PSARRRG S + C S+ R +++ R
Sbjct: 226 TLPPSARRRGSSGRTGPATRTRACRRTMSMTRPCRNMAGR 107
>gb|CN818508.1|CN818508 HRO4466_E09_J18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_E09_J18, mRNA sequence
Length = 588
Score = 27.2 bits (53), Expect = 3.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2 / +3
Query: 206 CLFPCYTPSSLAPFPFVCTLGCF 138
CL P S P+ +VCT CF
Sbjct: 399 CLIPLDNLSFSLPYIYVCTSSCF 467
>gb|CN819872.1|CN819872 HRO4407_A11_B21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_A11_B21, mRNA
sequence
Length = 551
Score = 27.2 bits (53), Expect = 3.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2 / +3
Query: 206 CLFPCYTPSSLAPFPFVCTLGCF 138
CL P S P+ +VCT CF
Sbjct: 327 CLIPLDNLSFSLPYIYVCTSSCF 395
>gb|CN820785.1|CN820785 HRO4414_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_G11_M22, mRNA
sequence
Length = 595
Score = 27.2 bits (53), Expect = 3.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1 / -3
Query: 687 TLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDR 568
TL PSARRRG S + C S+ R +++ R
Sbjct: 386 TLPPSARRRGSSGRTGPATRTRACRRTMSMTRPCRNMAGR 267
>gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A05_B09, mRNA sequence
Length = 808
Score = 26.7 bits (52), Expect = 4.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2 / -3
Query: 227 SLSSTLGCLFPCYTPSSLAPFPFVCTL 147
S S LGC FP + L P V TL
Sbjct: 557 SYKSVLGCFFPLSSRLELRKVPVVITL 477
>gb|CN815675.1|CN815675 HRO4514_C08_E16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C08_E16, mRNA sequence
Length = 586
Score = 26.7 bits (52), Expect = 4.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1 / +2
Query: 358 THTRQCAEIWRWREAGRRPWMERDSARA 441
T + WR R GRR W R RA
Sbjct: 107 TRSSAYTSCWRRRRTGRRCWSGRAGGRA 190
>gb|CN817979.1|CN817979 HRO4472_H11_O22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_H11_O22, mRNA sequence
Length = 622
Score = 26.7 bits (52), Expect = 4.7
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +1 / -3
Query: 352 VHTHTRQCAEIWRWREAGRRPWMERDSARADAAYMRR 462
+H+ QC + ++W +A + + RA+ M+R
Sbjct: 215 LHSQETQCMDTFQWHQAASSEPVSSHNRRANCKQMQR 105
>gb|CN819595.1|CN819595 HRO4402_A01_A02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_A01_A02, mRNA
sequence
Length = 611
Score = 26.7 bits (52), Expect = 4.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2 / -1
Query: 227 SLSSTLGCLFPCYTPSSLAPFPFVCTL 147
S S LGC FP + L P V TL
Sbjct: 251 SYKSVLGCFFPLSSRLELRKVPVVITL 171
>gb|CN821632.1|CN821632 HRO4408_E03_J06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_E03_J06, mRNA
sequence
Length = 727
Score = 26.7 bits (52), Expect = 4.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2 / -3
Query: 227 SLSSTLGCLFPCYTPSSLAPFPFVCTL 147
S S LGC FP + L P V TL
Sbjct: 164 SYKSVLGCFFPLSSRLELRKVPVVITL 84
>gb|CN821430.1|CN821430 HRO4425_C03_E05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C03_E05, mRNA
sequence
Length = 605
Score = 26.7 bits (52), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3 / +3
Query: 436 ARCLSPSMDDGRPLAIARSQRIAECVCVP 350
AR P+ R ARS+ CVCVP
Sbjct: 306 ARAGDPARSTDRSATKARSEHGQTCVCVP 392
>gb|CN815473.1|CN815473 HRO4512_A09_B18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_A09_B18, mRNA sequence
Length = 604
Score = 26.3 bits (51), Expect = 6.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2 / -1
Query: 419 IHGRRPASRHRQISAHCRVCVCTHAYS 339
+H RRP R R R+ +C H S
Sbjct: 244 LHTRRPGLRRRTYLLSVRLALCVHICS 164
>gb|CN819069.1|CN819069 HRO4469_A08_B15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_A08_B15, mRNA sequence
Length = 435
Score = 26.3 bits (51), Expect = 6.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2 / +1
Query: 479 RPAGHARRIYAASARALSLSIHGRRPASRHRQ 384
RP RR + +A A S R PASRHR+
Sbjct: 100 RPPRSWRRSWTRAAAAWRPSWWRRSPASRHRR 195
>gb|CN820525.1|CN820525 HRO4413_D04_G07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D04_G07, mRNA
sequence
Length = 221
Score = 26.3 bits (51), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1 / -2
Query: 465 RAPHICSICARAVSLHPW 412
R PH IC A+SLH W
Sbjct: 91 RQPHT*LICK*AISLHYW 38
>gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA, complete cds
Length = 3408
Score = 26.3 bits (51), Expect = 6.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1 / -2
Query: 394 REAGRRPWMERDSARADAAYMRRAWPAG 477
R R PW R SAR+ RR+ AG
Sbjct: 1100 RAGRRSPWARRTSARSRRRCRRRSRQAG 1017
>gb|CN814877.1|CN814877 HRO4503_D12_H23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D12_H23, mRNA sequence
Length = 862
Score = 25.8 bits (50), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2 / -2
Query: 74 CFLLDRQPTNRESSYRSICQL 12
CF L R N +++RS+C L
Sbjct: 609 CFALGRGLVNGSATFRSVCTL 547
>gb|CN818039.1|CN818039 HRO4472_D02_G04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_D02_G04, mRNA sequence
Length = 445
Score = 25.8 bits (50), Expect = 8.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1 / -1
Query: 370 QCAEIWRWREAGRRPW 417
+C WR R RRPW
Sbjct: 94 RCRGSWRGRGGARRPW 47
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,187,949
Number of Sequences: 8143
Number of extensions: 74686
Number of successful extensions: 734
Number of sequences better than 10.0: 28
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 259292994
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)