TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 8635730.2.1
         (1031 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AJ133638.1|ASA133638  Avena sativa mRNA for myb protein       121   2e-028
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
          Length = 2287

 Score =  121 bits (259), Expect = 2e-028
 Identities = 43/74 (58%), Positives = 59/74 (79%)
 Frame = +1 / +2

                                                                       
Query: 1   RCGKSCRLRWLNYLRPELRHGGFTDEEDSLILSLYGEIGSKWSVIASRLPGRTDNDVKNY 180
           RCGKSCRLRW N+LRP L+ G FT EE+ LI+ L+ ++G+KW+ +A+ LPGRTDN++KNY
Sbjct: 491 RCGKSCRLRWANHLRPNLKKGAFTPEEERLIIQLHSKMGNKWARMAANLPGRTDNEIKNY 670

                         
Query: 181 WNTKLKKRYLASST 222
           WNT++K+   A  T
Sbjct: 671 WNTRIKRCQRAGLT 712
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 9,471,427
Number of Sequences: 8143
Number of extensions: 137506
Number of successful extensions: 2354
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 361549305
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)