TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010462.2.1
(638 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 64 2e-023
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 63.8 bits (133), Expect(3) = 2e-023
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +1 / +1
Query: 76 ESGXPLVPNRIRECRSYPLYRFVREEVGTEYLTGERTRSP 195
E+G +PN I+E RS+PLYRFVREE+G YLTGE+ SP
Sbjct: 109 ETGTAPIPNLIKESRSFPLYRFVREELGCVYLTGEKLLSP 228
Score = 45.5 bits (93), Expect(3) = 2e-023
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1 / +1
Query: 247 IDPLLECLKEWNGAPLPL 300
IDP+LECLKEWNG PLP+
Sbjct: 277 IDPMLECLKEWNGEPLPI 330
Score = 31.3 bits (62), Expect(3) = 2e-023
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 192 PPARSSTRCSW 224
PPARS+TRCSW
Sbjct: 224 PPARSATRCSW 256
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,814,878
Number of Sequences: 8143
Number of extensions: 97488
Number of successful extensions: 1487
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 208331770
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)