TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297169.2.1
(545 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815908.1|CN815908 HRO4511_G10_N19ZS5 Lib AA071E1X Aven... 73 3e-034
>gb|CN815908.1|CN815908 HRO4511_G10_N19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_G10_N19, mRNA sequence
Length = 718
Score = 73.1 bits (154), Expect(3) = 3e-034
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +1 / +3
Query: 55 YVQTDPSPTATIVFRGTVIGKSPSAPRVAAFSSRGPNYRAPEILKPDVIAPGVNILAA 228
Y+ + P A I T+ GK AP+VA FSSRGP+ R P +LKPD+ APGVNILAA
Sbjct: 33 YIGSQRLPIAKIEPARTITGKQVPAPKVAFFSSRGPSIRYPTVLKPDIAAPGVNILAA 206
Score = 66.2 bits (139), Expect(3) = 3e-034
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +1 / +3
Query: 280 EFNIISGTSMSCPHVSGLAALLRQAHPEWSPAAIKSALMTTAYNLDNSG 426
E+ SG SMS PHV+G+ ALL+ HP WS AA+KSA++TTA D G
Sbjct: 216 EYAFNSGNSMSTPHVAGVVALLKAVHPHWSHAALKSAIVTTASTKDEYG 362
Score = 38.0 bits (77), Expect(3) = 3e-034
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1 / +3
Query: 466 PFVRGAGHVDPNAALDPRLVYD 531
PF G G+++PNAA DP LVYD
Sbjct: 405 PFDYGGGNINPNAAADPGLVYD 470
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.316 0.132 0.393
Matrix: BLOSUM62
Number of Hits to DB: 4,058,687
Number of Sequences: 8143
Number of extensions: 42130
Number of successful extensions: 1094
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 170341859
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)