TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705280.3.1
(980 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816442.1|CN816442 HRO4520_G07_N14ZS5 Lib AA071E1X Aven... 35 0.021
gb|CN815181.1|CN815181 HRO4506_G08_M16ZS5 Lib AA071E1X Aven... 28 0.12
gb|CN815152.1|CN815152 HRO4506_D11_G22ZS5 Lib AA071E1X Aven... 30 0.13
gb|CN818008.1|CN818008 HRO4472_G03_M06ZS5 Lib AA070E1X Aven... 32 0.21
gb|CN819367.1|CN819367 HRO4405_B06_C11ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN819526.1|CN819526 HRO4401_B11_C21ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN820207.1|CN820207 HRO4412_E09_J18ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN820910.1|CN820910 HRO4421_D03_G05ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN820960.1|CN820960 HRO4421_H10_O19ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN821291.1|CN821291 HRO4423_F09_L17ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN821385.1|CN821385 HRO4424_G01_N02ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN821489.1|CN821489 HRO4425_H07_O13ZS5 Lib AA069E1X Aven... 32 0.21
gb|CN818813.1|CN818813 HRO4473_G02_XXXZS5 Lib AA070E1X Aven... 31 0.26
gb|CN819953.1|CN819953 HRO4409_A12_A23ZS5 Lib AA069E1X Aven... 31 0.36
gb|CN819733.1|CN819733 HRO4403_E03_J05ZS5 Lib AA069E1X Aven... 30 0.50
gb|CN820918.1|CN820918 HRO4421_D11_G21ZS5 Lib AA069E1X Aven... 30 0.50
gb|CN815677.1|CN815677 HRO4514_C10_E20ZS5 Lib AA071E1X Aven... 26 0.59
gb|AF237553.1| Avena sativa receptor-like kinase extracellu... 30 0.69
gb|CN818182.1|CN818182 HRO4471_B04_C07ZS5 Lib AA070E1X Aven... 29 1.3
gb|CN820092.1|CN820092 HRO4411_A04_B07ZS5 Lib AA069E1X Aven... 29 1.3
gb|CN821124.1|CN821124 HRO4427_G07_N13ZS5 Lib AA069E1X Aven... 29 1.3
gb|CN819375.1|CN819375 HRO4405_C04_E07ZS5 Lib AA069E1X Aven... 29 1.4
gb|CN816409.1|CN816409 HRO4520_D09_H18ZS5 Lib AA071E1X Aven... 28 1.8
gb|CN818316.1|CN818316 HRO4457_A11_B21ZS5 Lib AA070E1X Aven... 28 1.8
gb|CN818783.1|CN818783 HRO4468_E01_I02ZS5 Lib AA070E1X Aven... 28 1.8
gb|CN818991.1|CN818991 HRO4474_E04_J08ZS5 Lib AA070E1X Aven... 28 1.8
gb|CN820898.1|CN820898 HRO4421_B12_C23ZS5 Lib AA069E1X Aven... 28 1.8
emb|AX458011.1| Sequence 3 from Patent WO0246387 28 1.8
gb|CN814946.1|CN814946 HRO4504_B12_D24ZS5 Lib AA071E1X Aven... 28 1.9
gb|CN817655.1|CN817655 HRO4463_A12_A23ZS5 Lib AA070E1X Aven... 28 1.9
gb|CN817635.1|CN817635 HRO4453_H08_P15ZS5 Lib AA070E1X Aven... 28 2.4
gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Aven... 28 2.6
gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Aven... 28 2.6
gb|CN820388.1|CN820388 HRO4418_G08_M16ZS5 Lib AA069E1X Aven... 24 3.3
gb|CN819708.1|CN819708 HRO4403_C01_F01ZS5 Lib AA069E1X Aven... 28 3.4
gb|CN819859.1|CN819859 HRO4404_H07_P14ZS5 Lib AA069E1X Aven... 28 3.4
gb|CN820694.1|CN820694 HRO4416_D12_H24ZS5 Lib AA069E1X Aven... 28 3.4
gb|CN816893.1|CN816893 HRO4526_A01_A02ZS5 Lib AA071E1X Aven... 28 3.6
gb|CN821037.1|CN821037 HRO4422_G12_M24ZS5 Lib AA069E1X Aven... 24 3.8
gb|CN821305.1|CN821305 HRO4423_G12_N23ZS5 Lib AA069E1X Aven... 24 3.9
gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Aven... 25 4.1
gb|CN815539.1|CN815539 HRO4512_G07_N14ZS5 Lib AA071E1X Aven... 27 4.6
gb|CN816200.1|CN816200 HRO4518_A10_A20ZS5 Lib AA071E1X Aven... 27 4.6
gb|CN820071.1|CN820071 HRO4410_G06_M12ZS5 Lib AA069E1X Aven... 27 4.6
gb|M38446.1|ASTAVE A.sativa avenin mRNA, complete cds, clon... 27 4.6
emb|AX840038.1| Sequence 107 from Patent WO03078629 27 4.6
emb|AX840624.1| Sequence 168 from Patent WO03077643 27 4.6
gb|CN814950.1|CN814950 HRO4504_C04_F08ZS5 Lib AA071E1X Aven... 27 6.3
gb|CN816915.1|CN816915 HRO4526_B12_C24ZS5 Lib AA071E1X Aven... 27 6.3
gb|CN818448.1|CN818448 HRO4460_D11_G22ZS5 Lib AA070E1X Aven... 27 6.3
gb|CN819596.1|CN819596 HRO4402_A02_A04ZS5 Lib AA069E1X Aven... 27 6.3
gb|CN820767.1|CN820767 HRO4414_E08_I16ZS5 Lib AA069E1X Aven... 27 6.3
gb|CN821444.1|CN821444 HRO4425_D07_G13ZS5 Lib AA069E1X Aven... 27 6.3
gb|CN819762.1|CN819762 HRO4403_G10_N19ZS5 Lib AA069E1X Aven... 27 6.7
gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN815556.1|CN815556 HRO4513_A02_A03ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN815628.1|CN815628 HRO4513_G06_M11ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN816387.1|CN816387 HRO4520_B06_D12ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN816879.1|CN816879 HRO4525_G11_M21ZS5 Lib AA071E1X Aven... 26 8.7
gb|CN817712.1|CN817712 HRO4461_F05_L09ZS5 Lib AA070E1X Aven... 26 8.7
gb|CN819854.1|CN819854 HRO4404_H01_P02ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN820034.1|CN820034 HRO4410_D04_G08ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN821040.1|CN821040 HRO4422_H03_O06ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN821373.1|CN821373 HRO4424_F01_L02ZS5 Lib AA069E1X Aven... 26 8.7
gb|CN819231.1|CN819231 HRO4451_F06_K11ZS5 Lib AA070E1X Aven... 26 9.2
gb|CN819232.1|CN819232 HRO4451-8_F06_K11ZS5 Lib AA070E1X Av... 26 9.2
>gb|CN816442.1|CN816442 HRO4520_G07_N14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_G07_N14, mRNA sequence
Length = 830
Score = 34.8 bits (70), Expect = 0.021
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2 / +2
Query: 625 LRRRMIRTVSPLHSCCRSQTTRAQHVGIEVLCRLCCSDQELKTHMNP 485
L+ M+R + P+ R +TT A +E+ R+C S + T ++P
Sbjct: 242 LQSSMVRRIKPMTLTSRKRTTMAPRRFLEIA*RMCTSHLSVNTQLSP 382
>gb|CN815181.1|CN815181 HRO4506_G08_M16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_G08_M16, mRNA sequence
Length = 529
Score = 28.0 bits (55), Expect = 2.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 799 CTCPAGMSGDGLK 837
C CP G +GDG+K
Sbjct: 76 CKCPVGFTGDGVK 114
Score = 25.3 bits (49), Expect(2) = 0.12
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1 / +1
Query: 712 GPNGCTDINECITRNPC 762
G C DI+EC T+ C
Sbjct: 106 GVKSCEDIDECKTKTAC 156
Score = 24.4 bits (47), Expect(2) = 0.12
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1 / +1
Query: 772 CSNTIGGFQCTC 807
C NT G ++C+C
Sbjct: 175 CKNTWGSYECSC 210
>gb|CN815152.1|CN815152 HRO4506_D11_G22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_D11_G22, mRNA sequence
Length = 668
Score = 29.8 bits (59), Expect(2) = 0.13
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1 / -2
Query: 128 TRPSSNEMSRIPSMLFPMDSNGPLCPHT 45
T P S + R+ + + S PLCPHT
Sbjct: 94 TAPRSRVLKRLRPLSLSLHSPDPLCPHT 11
Score = 22.1 bits (42), Expect(2) = 0.13
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1 / -1
Query: 320 LEQKEAQPPLYPVLPFK 270
L ++ +PPL+P+LP +
Sbjct: 179 LTRR*PRPPLWPLLPIE 129
>gb|CN818008.1|CN818008 HRO4472_G03_M06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_G03_M06, mRNA sequence
Length = 703
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +2
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 2 PNRSPSLNQCPNRNPSLNQCQN 67
>gb|CN819367.1|CN819367 HRO4405_B06_C11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_B06_C11, mRNA
sequence
Length = 773
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 91 PNRSPSLNQCPNRNPSLNQCQN 156
>gb|CN819526.1|CN819526 HRO4401_B11_C21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_B11_C21, mRNA
sequence
Length = 830
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 144 PNRSPSLNQCPNRNPSLNQCQN 209
>gb|CN820207.1|CN820207 HRO4412_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_E09_J18, mRNA
sequence
Length = 763
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 358 PNRSPSLNQCPNRNPSLNQCQN 423
Score = 26.2 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1 / +1
Query: 709 QGPNGCTDINECITRNPCTNRCSN 780
Q PN +N C + N C NR N
Sbjct: 136 QCPNRSPSLNRCPSLNQCPNRSLN 207
>gb|CN820910.1|CN820910 HRO4421_D03_G05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_D03_G05, mRNA
sequence
Length = 643
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +2
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 209 PNRSPSLNQCPNRNPSLNQCQN 274
>gb|CN820960.1|CN820960 HRO4421_H10_O19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_H10_O19, mRNA
sequence
Length = 900
Score = 31.7 bits (63), Expect = 0.21
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1 / +3
Query: 709 QGPNGCTDINECITRNPCTNRCSN 780
Q PN +N C RNP N+C N
Sbjct: 207 QSPNRNPSLNRCPNRNPSQNQCPN 278
Score = 28.9 bits (57), Expect = 1.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1 / +3
Query: 718 NGCTDINECITRNPCTNRCSN 780
N C +++ C+ R+P N+C N
Sbjct: 306 NQCPNLSRCLNRSPNRNQCRN 368
Score = 26.6 bits (52), Expect = 6.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 736 NECITRNPCTNRCSN 780
N+C RNP N+C N
Sbjct: 354 NQCRNRNPSLNQCQN 398
>gb|CN821291.1|CN821291 HRO4423_F09_L17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F09_L17, mRNA
sequence
Length = 891
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 150 PNRSPSLNQCPNRNPSLNQCQN 215
>gb|CN821385.1|CN821385 HRO4424_G01_N02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G01_N02, mRNA
sequence
Length = 614
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 333 PNRSPSLNQCPNRNPSLNQCQN 398
Score = 26.2 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1 / +3
Query: 709 QGPNGCTDINECITRNPCTNRCSN 780
Q PN +N C + N C NR N
Sbjct: 111 QCPNRSPSLNRCPSLNQCPNRSLN 182
>gb|CN821489.1|CN821489 HRO4425_H07_O13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H07_O13, mRNA
sequence
Length = 850
Score = 31.7 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 715 PNGCTDINECITRNPCTNRCSN 780
PN +N+C RNP N+C N
Sbjct: 358 PNRSPSLNQCPNRNPSLNQCQN 423
Score = 26.2 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1 / +1
Query: 709 QGPNGCTDINECITRNPCTNRCSN 780
Q PN +N C + N C NR N
Sbjct: 136 QCPNRSPSLNRCPSLNQCPNRSLN 207
>gb|CN818813.1|CN818813 HRO4473_G02_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_G02_XXX, mRNA sequence
Length = 615
Score = 31.2 bits (62), Expect = 0.26
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3 / -2
Query: 822 RRRPQGRKWLQWSKHTSDCNSCRISSASASPHPW 923
RRRP W WS TS S + A P W
Sbjct: 230 RRRPGSPPWRPWSSCTSPFGSSSSAGADLEPAAW 129
>gb|CN819953.1|CN819953 HRO4409_A12_A23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_A12_A23, mRNA
sequence
Length = 818
Score = 30.7 bits (61), Expect = 0.36
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = -2 / -1
Query: 721 HLALAGMGSPRIHWSNCSGNRFRLMSCSSRHSLRRRMIRTVSPLHSCCRSQTTRAQHVGI 542
H +AGMGSP H+ + F L + S+ +S + S + + ++ +
Sbjct: 533 HPTMAGMGSPHKHFLTSENSAFSLFAASTSSGDATATTTPLSLMVSTASANSLKSFTLVA 354
Query: 541 EVLCRLC 521
+ RLC
Sbjct: 353 SISSRLC 333
>gb|CN819733.1|CN819733 HRO4403_E03_J05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_E03_J05, mRNA
sequence
Length = 648
Score = 30.3 bits (60), Expect = 0.50
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3 / +1
Query: 24 PVPWI*SCVWTQWSVAVHRKQHAWDS*HLVA*WSCEHI 137
P PW * C W + H+++ S H W+ +HI
Sbjct: 130 PHPWP*GCPWPELGQHAHQREAWLGSNHEAEGWAEDHI 243
>gb|CN820918.1|CN820918 HRO4421_D11_G21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_D11_G21, mRNA
sequence
Length = 819
Score = 30.3 bits (60), Expect = 0.50
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2 / -3
Query: 584 AVKRRNCPDHTPAQRMPTATTHQTES 661
A+ R +C D TPA+ PT++T Q +S
Sbjct: 790 AMPRTSCRDATPAKGTPTSSTLQDQS 713
>gb|CN815677.1|CN815677 HRO4514_C10_E20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C10_E20, mRNA sequence
Length = 700
Score = 26.2 bits (51), Expect(2) = 0.59
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2 / +1
Query: 640 SSRHSLRRRMIRTVSPLHSCCRSQ 569
S RH+ +R R V+P CC S+
Sbjct: 70 SRRHASPQRRRRKVTPCSPCCSSE 141
Score = 23.4 bits (45), Expect(2) = 0.59
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -2 / +1
Query: 139 PICSQDHQATRCQESQACC 83
P CS + T C S + C
Sbjct: 124 PCCSSEEPTTACPSSSSSC 180
>gb|AF237553.1| Avena sativa receptor-like kinase extracellular domain rlk11a3
pseudogene, complete sequence
Length = 835
Score = 29.8 bits (59), Expect = 0.69
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3 / -3
Query: 849 TTSFLEAVAAHPCWARALETTYCV*AP 769
T A AA P W RALE C AP
Sbjct: 350 TVRITPAAAAEPTWPRALERESCCMAP 270
>gb|CN818182.1|CN818182 HRO4471_B04_C07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_B04_C07, mRNA sequence
Length = 782
Score = 28.9 bits (57), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +3
Query: 505 LKTHMNPAPRRRPDHMASNRNRCRC 431
L+ H +P PR RP H AS + C
Sbjct: 369 LQWHSSPGPRARPGHSASG*SAQEC 443
>gb|CN820092.1|CN820092 HRO4411_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_A04_B07, mRNA
sequence
Length = 666
Score = 28.9 bits (57), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +1
Query: 505 LKTHMNPAPRRRPDHMASNRNRCRC 431
L+ H +P PR RP H AS + C
Sbjct: 220 LQWHSSPGPRARPGHSASG*SAQEC 294
>gb|CN821124.1|CN821124 HRO4427_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_G07_N13, mRNA
sequence
Length = 664
Score = 28.9 bits (57), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +3
Query: 505 LKTHMNPAPRRRPDHMASNRNRCRC 431
L+ H +P PR RP H AS + C
Sbjct: 234 LQWHSSPGPRARPGHSASG*SAQEC 308
>gb|CN819375.1|CN819375 HRO4405_C04_E07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_C04_E07, mRNA
sequence
Length = 653
Score = 28.9 bits (57), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +3
Query: 715 PNGCTDINECITRNPCTNRC 774
PN +N+C RNP N+C
Sbjct: 588 PNRSPSLNQCPNRNPSLNQC 647
Score = 26.2 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1 / +3
Query: 709 QGPNGCTDINECITRNPCTNRCSN 780
Q PN +N C + N C NR N
Sbjct: 366 QCPNRSPSLNRCPSLNQCPNRSLN 437
>gb|CN816409.1|CN816409 HRO4520_D09_H18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_D09_H18, mRNA sequence
Length = 857
Score = 28.5 bits (56), Expect = 1.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +3
Query: 505 LKTHMNPAPRRRPDHMASNRNRCRC 431
L+ H +P PR RP H AS + C
Sbjct: 375 LQWHSSPGPRARPGHSASG*SA*EC 449
>gb|CN818316.1|CN818316 HRO4457_A11_B21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_A11_B21, mRNA sequence
Length = 798
Score = 28.5 bits (56), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2 / +2
Query: 742 IH*YLCIHLALAGMGSPRIHWSNCSGNRFRLMSCSSRHSLR 620
++*+ + +ALA GSP++ + RFR RH +R
Sbjct: 206 VN*WKVMRVALANCGSPKLAVAEYPLKRFRRQILQRRHGVR 328
>gb|CN818783.1|CN818783 HRO4468_E01_I02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_E01_I02, mRNA sequence
Length = 615
Score = 28.5 bits (56), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1 / -1
Query: 125 RPSSNEMSRIPSMLFPMDSNGPLCPHTTLNP 33
RPS N +SR ++ + G CPH +P
Sbjct: 297 RPSGNSLSRNHALFSLSYTRGSFCPHPMSSP 205
>gb|CN818991.1|CN818991 HRO4474_E04_J08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_E04_J08, mRNA sequence
Length = 703
Score = 28.5 bits (56), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2 / +2
Query: 742 IH*YLCIHLALAGMGSPRIHWSNCSGNRFRLMSCSSRHSLR 620
++*+ + +ALA GSP++ + RFR RH +R
Sbjct: 11 VN*WKVMRVALANCGSPKLAVAEYPLKRFRRQILQRRHGVR 133
>gb|CN820898.1|CN820898 HRO4421_B12_C23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_B12_C23, mRNA
sequence
Length = 713
Score = 28.5 bits (56), Expect = 1.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2 / +1
Query: 505 LKTHMNPAPRRRPDHMASNRNRCRC 431
L+ H +P PR RP H AS + C
Sbjct: 295 LQWHSSPGPRARPGHSASG*SA*EC 369
>emb|AX458011.1| Sequence 3 from Patent WO0246387
Length = 1323
Score = 28.5 bits (56), Expect = 1.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3 / +2
Query: 876 CNSCRISSASASPHPW 923
C+SC+ SSA A+P PW
Sbjct: 578 CHSCQGSSA*AAPAPW 625
>gb|CN814946.1|CN814946 HRO4504_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_B12_D24, mRNA sequence
Length = 482
Score = 28.5 bits (56), Expect = 1.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1 / +1
Query: 637 CYNSSNGIGYRCNCSSGFEG 696
C N G G CNC SG G
Sbjct: 82 CCNGKCGCGSSCNCGSGCNG 141
>gb|CN817655.1|CN817655 HRO4463_A12_A23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_A12_A23, mRNA sequence
Length = 500
Score = 28.5 bits (56), Expect = 1.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1 / +3
Query: 637 CYNSSNGIGYRCNCSSGFEG 696
C N G G CNC SG G
Sbjct: 81 CCNGKCGCGSSCNCGSGCNG 140
>gb|CN817635.1|CN817635 HRO4453_H08_P15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_H08_P15, mRNA sequence
Length = 789
Score = 28.0 bits (55), Expect = 2.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 784 LCLSTYWCTDFW*CIH*YLCIH 719
LC + WCT +* +LCIH
Sbjct: 692 LCKTVAWCTGAY*LFVSFLCIH 757
>gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B08_C16, mRNA
sequence
Length = 560
Score = 28.0 bits (55), Expect = 2.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1 / -1
Query: 763 TNRCSNTIGGFQCTCPAGMSGDG 831
++RCS T G CTC +G
Sbjct: 260 SSRCSRTCAGLSCTCGRSREPEG 192
>gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B09_D18, mRNA
sequence
Length = 540
Score = 28.0 bits (55), Expect = 2.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1 / -3
Query: 763 TNRCSNTIGGFQCTCPAGMSGDG 831
++RCS T G CTC +G
Sbjct: 256 SSRCSRTCAGLSCTCGRSREPEG 188
>gb|CN820388.1|CN820388 HRO4418_G08_M16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_G08_M16, mRNA
sequence
Length = 679
Score = 23.9 bits (46), Expect(2) = 3.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3 / +1
Query: 885 CRISSASASPHPWLLDSLAW* 947
CR S A + PW SL W*
Sbjct: 385 CRQSQAHTTAAPW*ACSLVW* 447
Score = 23.0 bits (44), Expect(2) = 3.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3 / +2
Query: 531 HKTSIPTCC 557
HK SIP CC
Sbjct: 26 HKCSIPCCC 52
>gb|CN819708.1|CN819708 HRO4403_C01_F01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C01_F01, mRNA
sequence
Length = 674
Score = 27.6 bits (54), Expect = 3.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 83 TACLGFLTSRCL 118
T+C GFLT+RCL
Sbjct: 540 TSCCGFLTARCL 505
>gb|CN819859.1|CN819859 HRO4404_H07_P14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_H07_P14, mRNA
sequence
Length = 467
Score = 27.6 bits (54), Expect = 3.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 83 TACLGFLTSRCL 118
T+C GFLT+RCL
Sbjct: 312 TSCCGFLTARCL 277
>gb|CN820694.1|CN820694 HRO4416_D12_H24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_D12_H24, mRNA
sequence
Length = 625
Score = 27.6 bits (54), Expect = 3.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2 / -3
Query: 260 WPCF*MAARGIAVAVLPFALVEITSSTAHALGWL 361
WP F ++R I + LP LVEI H + +L
Sbjct: 548 WPGFRNSSRQIELQDLPLILVEILHRLTHLIIYL 447
>gb|CN816893.1|CN816893 HRO4526_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A01_A02, mRNA sequence
Length = 621
Score = 27.6 bits (54), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1 / +1
Query: 925 FWTHWLGKKRKLAKTRQR 978
FWTHWL RK + T R
Sbjct: 184 FWTHWLNLWRKPSFTNPR 237
>gb|CN821037.1|CN821037 HRO4422_G12_M24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G12_M24, mRNA
sequence
Length = 784
Score = 23.9 bits (46), Expect(2) = 3.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3 / +3
Query: 885 CRISSASASPHPWLLDSLAW* 947
CR S A + PW SL W*
Sbjct: 477 CRQSQAHTTAAPW*ACSLVW* 539
Score = 23.0 bits (44), Expect(2) = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3 / +1
Query: 531 HKTSIPTCC 557
HK SIP CC
Sbjct: 118 HKCSIPCCC 144
>gb|CN821305.1|CN821305 HRO4423_G12_N23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_G12_N23, mRNA
sequence
Length = 815
Score = 23.9 bits (46), Expect(2) = 3.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3 / +2
Query: 885 CRISSASASPHPWLLDSLAW* 947
CR S A + PW SL W*
Sbjct: 452 CRQSQAHTTAAPW*ACSLVW* 514
Score = 23.0 bits (44), Expect(2) = 3.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3 / +3
Query: 531 HKTSIPTCC 557
HK SIP CC
Sbjct: 93 HKCSIPCCC 119
>gb|CN818659.1|CN818659 HRO4455_A08_A15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_A08_A15, mRNA sequence
Length = 831
Score = 25.3 bits (49), Expect(2) = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -1
Query: 663 LPLQLLQWIRGEPIPARAKWM 725
+PLQL WI G +PA +++
Sbjct: 399 VPLQLSNWILGLDLPAPGEFL 337
Score = 21.6 bits (41), Expect(2) = 4.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1 / -2
Query: 604 SGSYACAENAYCYNSSNG 657
SGSY C Y +SS+G
Sbjct: 722 SGSYRCTGLKYI*HSSHG 669
>gb|CN815539.1|CN815539 HRO4512_G07_N14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_G07_N14, mRNA sequence
Length = 681
Score = 27.1 bits (53), Expect = 4.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3 / +3
Query: 426 NQQRHRLRLLAMWSGLRRGA 485
++ RHR+RLL + +RRGA
Sbjct: 471 DRSRHRVRLLVLHRHIRRGA 530
>gb|CN816200.1|CN816200 HRO4518_A10_A20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_A10_A20, mRNA sequence
Length = 577
Score = 27.1 bits (53), Expect = 4.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3 / +1
Query: 210 EDGPLKVNARVRRPSYALLRTSTSQYAHKTIKQRDVKNP 94
+D PLK++A+ R+ + R + T ++KNP
Sbjct: 94 QDDPLKLSAKTRQLGLIVCRGTAVMLVSPTEGTEEIKNP 210
Score = 26.2 bits (51), Expect = 9.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1 / +1
Query: 550 HVVLEWSVNGSSCEEAKLSGSYACAENAYC 639
HV+L S C+ GSY C EN C
Sbjct: 316 HVILCSSRL*ELCQSFMSDGSYVCQENNEC 405
>gb|CN820071.1|CN820071 HRO4410_G06_M12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G06_M12, mRNA
sequence
Length = 354
Score = 27.1 bits (53), Expect = 4.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1 / -2
Query: 743 HSLISVHPFGPCRYGFPSNPLEQLQR 666
H I P P R+GF NPL R
Sbjct: 188 HQPIPASPVSPDRFGFSVNPLSHRAR 111
>gb|M38446.1|ASTAVE A.sativa avenin mRNA, complete cds, clone lambda-3B3
Length = 758
Score = 27.1 bits (53), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3 / -2
Query: 603 QFRLFTAAAVHRPLEHNMSVLRFCVVC 523
Q L A++ R L ++ +RFC++C
Sbjct: 145 QLHLMLLASIMRTLHFLITTVRFCILC 65
>emb|AX840038.1| Sequence 107 from Patent WO03078629
Length = 645
Score = 27.1 bits (53), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3 / -1
Query: 603 QFRLFTAAAVHRPLEHNMSVLRFCVVC 523
Q L A++ R L ++ +RFC++C
Sbjct: 135 QLHLMLLASIMRTLHFLITTVRFCILC 55
>emb|AX840624.1| Sequence 168 from Patent WO03077643
Length = 645
Score = 27.1 bits (53), Expect = 4.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3 / -1
Query: 603 QFRLFTAAAVHRPLEHNMSVLRFCVVC 523
Q L A++ R L ++ +RFC++C
Sbjct: 135 QLHLMLLASIMRTLHFLITTVRFCILC 55
>gb|CN814950.1|CN814950 HRO4504_C04_F08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_C04_F08, mRNA sequence
Length = 519
Score = 26.6 bits (52), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2 / +3
Query: 14 RAPPCPVDLKLCVDTVVRCC 73
R P P LCV V+RCC
Sbjct: 258 RKQPEPRTCMLCVKDVIRCC 317
>gb|CN816915.1|CN816915 HRO4526_B12_C24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_B12_C24, mRNA sequence
Length = 524
Score = 26.6 bits (52), Expect = 6.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3 / +1
Query: 843 SFLEAVAAHPCWARALE 793
SFL A ++HPC R LE
Sbjct: 310 SFLTATSSHPCSIRMLE 360
>gb|CN818448.1|CN818448 HRO4460_D11_G22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_D11_G22, mRNA sequence
Length = 829
Score = 26.6 bits (52), Expect = 6.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3 / +3
Query: 255 RGGHAFEWQH 284
RGGHAF W+H
Sbjct: 12 RGGHAFLWRH 41
>gb|CN819596.1|CN819596 HRO4402_A02_A04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_A02_A04, mRNA
sequence
Length = 498
Score = 26.6 bits (52), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2 / +1
Query: 14 RAPPCPVDLKLCVDTVVRCC 73
R P P LCV V+RCC
Sbjct: 220 RKQPEPRTCMLCVKDVIRCC 279
>gb|CN820767.1|CN820767 HRO4414_E08_I16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_E08_I16, mRNA
sequence
Length = 849
Score = 26.6 bits (52), Expect = 6.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2 / -1
Query: 529 RLCCSDQELKTHMNPAPR 476
RLCCSD E + N PR
Sbjct: 414 RLCCSDMEPSSWHNAIPR 361
>gb|CN821444.1|CN821444 HRO4425_D07_G13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_D07_G13, mRNA
sequence
Length = 481
Score = 26.6 bits (52), Expect = 6.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / -2
Query: 580 CRSQTTRAQHVGIEVLCRLCCS 515
C+ Q Q + + VLC+ CCS
Sbjct: 291 CKQQVYE*QKLRLTVLCQKCCS 226
>gb|CN819762.1|CN819762 HRO4403_G10_N19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_G10_N19, mRNA
sequence
Length = 802
Score = 26.6 bits (52), Expect = 6.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1 / +1
Query: 718 NGCTDINECITRNPCTNR 771
N C +++ C+ RN C N+
Sbjct: 169 NQCPNLSRCLNRNQCPNQ 222
Score = 26.6 bits (52), Expect = 6.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1 / +1
Query: 709 QGPNGCTDINECITRNPCTNRCSN 780
+ PN +N C NP N+C N
Sbjct: 70 RSPNQNPSLNRCPNLNPSLNQCPN 141
>gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_F01_L02, mRNA sequence
Length = 525
Score = 26.2 bits (51), Expect = 8.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2 / -3
Query: 301 SHRYTPCCHSKAWP 260
SHRY PCC + P
Sbjct: 409 SHRYPPCCSHRVPP 368
>gb|CN815556.1|CN815556 HRO4513_A02_A03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_A02_A03, mRNA sequence
Length = 543
Score = 26.2 bits (51), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2 / +1
Query: 607 RTVSPLHSCCRSQTTRAQHVGIE 539
R P+ CRS+T ++HV IE
Sbjct: 160 RARMPIGKTCRSRTDGSRHVSIE 228
>gb|CN815628.1|CN815628 HRO4513_G06_M11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_G06_M11, mRNA sequence
Length = 855
Score = 26.2 bits (51), Expect = 8.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -2 / -1
Query: 304 HSHRYTPCCHSKAWPPRYNP 245
HS+R C + WPP P
Sbjct: 66 HSYRNQHVCQKERWPPASRP 7
>gb|CN816387.1|CN816387 HRO4520_B06_D12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_B06_D12, mRNA sequence
Length = 804
Score = 26.2 bits (51), Expect = 8.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2 / -2
Query: 529 RLCCSDQELKTHMNPAPR 476
R+C Q+ KTH P PR
Sbjct: 65 RICLMGQQPKTHQIPTPR 12
>gb|CN816879.1|CN816879 HRO4525_G11_M21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_G11_M21, mRNA sequence
Length = 625
Score = 26.2 bits (51), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3 / -3
Query: 771 VLKHNRWFPVHVPSRDERRRPQGRKWLQ 854
V+ HN F + + DER R R+WLQ
Sbjct: 467 VVPHNWLFTFKL*NHDERIRHFKREWLQ 384
>gb|CN817712.1|CN817712 HRO4461_F05_L09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_F05_L09, mRNA sequence
Length = 586
Score = 26.2 bits (51), Expect = 8.7
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2 / +2
Query: 505 LKTHMNPAPRRRPDHMASNRNRCRCWL 425
L+ H P P RR H N R WL
Sbjct: 122 LRLHRQPRPHRRRIHRPLNEPCQRVWL 202
>gb|CN819854.1|CN819854 HRO4404_H01_P02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_H01_P02, mRNA
sequence
Length = 771
Score = 26.2 bits (51), Expect = 8.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3 / -1
Query: 306 STATAIPRAAIQKHGHHVTTQSCELVPCV*ECEDGP 199
S ++A+ R I++ + SC +P ECE P
Sbjct: 492 SASSAVYRGNIKRASVGTSGSSCRSLPTAVECEKAP 385
>gb|CN820034.1|CN820034 HRO4410_D04_G08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_D04_G08, mRNA
sequence
Length = 638
Score = 26.2 bits (51), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2 / +3
Query: 133 CSQDHQATRCQESQACCFRWTATDHC 56
C++ HQA R + C T+TD C
Sbjct: 258 CAEAHQAQR*EGDLHLCEEHTSTDSC 335
>gb|CN821040.1|CN821040 HRO4422_H03_O06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H03_O06, mRNA
sequence
Length = 580
Score = 26.2 bits (51), Expect = 8.7
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2 / +2
Query: 505 LKTHMNPAPRRRPDHMASNRNRCRCWL 425
L+ H P P RR H N R WL
Sbjct: 179 LRLHRQPRPHRRRIHRPLNEPCQRVWL 259
>gb|CN821373.1|CN821373 HRO4424_F01_L02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_F01_L02, mRNA
sequence
Length = 694
Score = 26.2 bits (51), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3 / +1
Query: 600 FRLFTAAAVHRPLEHNMSVLRFCVVCVVQ 514
F L V + LEH + FCVVCV +
Sbjct: 13 FTLDGEYGVLQHLEHLLKTKGFCVVCVAE 99
>gb|CN819231.1|CN819231 HRO4451_F06_K11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_F06_K11, mRNA sequence
Length = 760
Score = 26.2 bits (51), Expect = 9.2
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 685 GFEGNPYLQG 714
GF+GNP+LQG
Sbjct: 130 GFQGNPFLQG 159
>gb|CN819232.1|CN819232 HRO4451-8_F06_K11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4451-8_F06_K11, mRNA
sequence
Length = 644
Score = 26.2 bits (51), Expect = 9.2
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 685 GFEGNPYLQG 714
GF+GNP+LQG
Sbjct: 130 GFQGNPFLQG 159
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.316 0.133 0.426
Matrix: BLOSUM62
Number of Hits to DB: 13,310,626
Number of Sequences: 8143
Number of extensions: 221300
Number of successful extensions: 1409
Number of sequences better than 10.0: 70
length of database: 1,567,487
effective HSP length: 41
effective length of database: 1,233,624
effective search space used: 351582840
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)