TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5352090.2.1
         (915 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819061.1|CN819061  HRO4459_H01_O01ZS5 Lib AA070E1X Aven...    56   2e-025
gb|CN816479.1|CN816479  HRO4521_C02_E03ZS5 Lib AA071E1X Aven...    56   2e-025

>gb|CN819061.1|CN819061 HRO4459_H01_O01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4459_H01_O01, mRNA sequence
          Length = 717

 Score = 56.1 bits (116), Expect(3) = 2e-025
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +3 / +1

                                         
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
           K R+RWT +LHE FVDAV +LGG EKATPK
Sbjct: 82  KQRMRWTPELHECFVDAVNKLGGSEKATPK 171




 Score = 46.4 bits (95), Expect(3) = 2e-025
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +2 / +1

                                      
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
           D+K S ++ EALR QMEVQ+RLHEQ+E
Sbjct: 316 DLKSSMDLTEALRLQMEVQKRLHEQLE 396




 Score = 45.5 bits (93), Expect(3) = 2e-025
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +2 / +1

                                           
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
           ++  K +L+ M V GLT++H+KSHLQKYR  +
Sbjct: 157 KATPKGVLKLMKVDGLTIYHVKSHLQKYRTAR 252



>gb|CN816479.1|CN816479 HRO4521_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_C02_E03, mRNA sequence
          Length = 625

 Score = 56.1 bits (116), Expect(3) = 2e-025
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +3 / +2

                                         
Query: 330 KPRLRWTADLHERFVDAVAQLGGPEKATPK 419
           K R+RWT +LHE FVDAV +LGG EKATPK
Sbjct: 290 KQRMRWTPELHECFVDAVNKLGGSEKATPK 379




 Score = 46.4 bits (95), Expect(3) = 2e-025
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +2 / +2

                                      
Query: 596 DMKESQEVKEALRAQMEVQRRLHEQVE 676
           D+K S ++ EALR QMEVQ+RLHEQ+E
Sbjct: 524 DLKSSMDLTEALRLQMEVQKRLHEQLE 604




 Score = 45.5 bits (93), Expect(3) = 2e-025
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +2 / +2

                                           
Query: 404 ESNTKNILRTMGVKGLTLFHLKSHLQKYRLGK 499
           ++  K +L+ M V GLT++H+KSHLQKYR  +
Sbjct: 365 KATPKGVLKLMKVDGLTIYHVKSHLQKYRTAR 460



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 9,148,815
Number of Sequences: 8143
Number of extensions: 125199
Number of successful extensions: 1249
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 317725218
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)