TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4CL
(1986 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Aven... 215 3e-056
gb|CN816052.1|CN816052 HRO4516_D03_H06ZS5 Lib AA071E1X Aven... 126 2e-029
gb|BE439236.1|BE439236 CDO1462_WHE03G08R ITEC CDO Oat cDNA ... 56 2e-008
gb|CN819945.1|CN819945 HRO4409_A01_A01ZS5 Lib AA069E1X Aven... 43 1e-004
gb|M83381.1|ASTAVEC A.sativa avenin mRNA, complete cds 30 0.001
gb|CN819999.1|CN819999 HRO4409_G05_M09ZS5 Lib AA069E1X Aven... 29 0.067
gb|M38722.1|ASTAVEB A.sativa avenin mRNA, complete cds 29 0.16
emb|X99262.1|ASBLPHREC A.sativa gene encoding blue-light ph... 28 0.38
gb|CN816102.1|CN816102 HRO4517_A06_A11ZS5 Lib AA071E1X Aven... 31 0.76
gb|CN819703.1|CN819703 HRO4403_B08_D15ZS5 Lib AA069E1X Aven... 31 0.76
gb|CN819824.1|CN819824 HRO4404_E03_J06ZS5 Lib AA069E1X Aven... 31 0.76
gb|U57787.1|ASU57787 Avena sativa permatin precursor mRNA, ... 31 0.76
gb|CN818562.1|CN818562 HRO4466_H05_P10ZS5 Lib AA070E1X Aven... 26 0.92
emb|AJ010728.1|AFA010728 Avena fatua alpha-Amy2A gene, exon... 28 0.96
gb|CN815771.1|CN815771 HRO4510_C11_E22ZS5 Lib AA071E1X Aven... 30 1.0
gb|CN816275.1|CN816275 HRO4518_H07_O14ZS5 Lib AA071E1X Aven... 30 1.0
gb|CN817704.1|CN817704 HRO4459_F11_K21ZS5 Lib AA070E1X Aven... 30 1.0
gb|CN819371.1|CN819371 HRO4405_B10_C19ZS5 Lib AA069E1X Aven... 30 1.0
gb|CN820333.1|CN820333 HRO4418_B10_C20ZS5 Lib AA069E1X Aven... 30 1.0
gb|CN821666.1|CN821666 HRO4408_H02_P04ZS5 Lib AA069E1X Aven... 30 1.0
gb|CK780254.1|CK780254 umn214 UMN cDNA from oat Avena sativ... 26 1.2
gb|CN814943.1|CN814943 HRO4504_B09_D18ZS5 Lib AA071E1X Aven... 30 1.4
gb|CN814961.1|CN814961 HRO4504_D03_H06ZS5 Lib AA071E1X Aven... 30 1.4
gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Aven... 30 1.4
gb|CN815345.1|CN815345 HRO4508_F07_L14ZS5 Lib AA071E1X Aven... 30 1.4
gb|CN816188.1|CN816188 HRO4517_H10_O19ZS5 Lib AA071E1X Aven... 30 1.4
gb|CN817112.1|CN817112 HRO4528_D03_H06ZS5 Lib AA071E1X Aven... 30 1.4
gb|CN817923.1|CN817923 HRO4462_A08_B16ZS5 Lib AA070E1X Aven... 30 1.4
gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Aven... 30 1.4
gb|CN819496.1|CN819496 HRO4406_G08_M16ZS5 Lib AA069E1X Aven... 30 1.4
emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 24 1.6
gb|CN814646.1|CN814646 HRO4501_A01_A01ZS5 Lib AA071E1X Aven... 29 2.0
gb|CN821232.1|CN821232 HRO4423_A03_B05ZS5 Lib AA069E1X Aven... 26 2.4
dbj|AB059557.2| Avena sativa MIP mRNA for myo-inositol-1-ph... 26 2.4
gb|CN821435.1|CN821435 HRO4425_C08_E15ZS5 Lib AA069E1X Aven... 25 2.4
gb|CN820070.1|CN820070 HRO4410_G05_M10ZS5 Lib AA069E1X Aven... 26 2.4
gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRK... 27 2.5
gb|CN815144.1|CN815144 HRO4506_D03_G06ZS5 Lib AA071E1X Aven... 29 2.7
gb|CN816588.1|CN816588 HRO4522_E05_I10ZS5 Lib AA071E1X Aven... 29 2.7
gb|CN817447.1|CN817447 HRO4465_H12_P23ZS5 Lib AA070E1X Aven... 29 2.7
gb|CN819950.1|CN819950 HRO4409_A07_A13ZS5 Lib AA069E1X Aven... 29 2.7
gb|CN820451.1|CN820451 HRO4419_E06_J11ZS5 Lib AA069E1X Aven... 29 2.7
gb|BE439197.1|BE439197 CDO938_WHE03C03R ITEC CDO Oat cDNA L... 29 3.7
gb|CN815095.1|CN815095 HRO4505_G11_M21ZS5 Lib AA071E1X Aven... 29 3.7
gb|CN815499.1|CN815499 HRO4512_C12_F24ZS5 Lib AA071E1X Aven... 29 3.7
gb|CN815856.1|CN815856 HRO4511_C05_F09ZS5 Lib AA071E1X Aven... 29 3.7
gb|CN815865.1|CN815865 HRO4511_D02_H03ZS5 Lib AA071E1X Aven... 29 3.7
gb|CN816507.1|CN816507 HRO4521_E10_I19ZS5 Lib AA071E1X Aven... 29 3.7
gb|CN816945.1|CN816945 HRO4526_E09_I18ZS5 Lib AA071E1X Aven... 29 3.7
gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Aven... 29 3.7
gb|CN818895.1|CN818895 HRO4473_C11_XXXZS5 Lib AA070E1X Aven... 29 3.7
gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Aven... 29 3.7
gb|CN817667.1|CN817667 HRO4463_A06_A11ZS5 Lib AA070E1X Aven... 26 4.3
gb|CN815801.1|CN815801 HRO4510_F06_K12ZS5 Lib AA071E1X Aven... 28 5.1
gb|CN815942.1|CN815942 HRO4515_B09_D17ZS5 Lib AA071E1X Aven... 28 5.1
gb|CN816020.1|CN816020 HRO4516_A06_B12ZS5 Lib AA071E1X Aven... 28 5.1
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 28 5.1
gb|U80041.1|AFU80041 Avena fatua Af10-protein mRNA, complet... 28 5.1
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 25 5.3
gb|CN815612.1|CN815612 HRO4513_F02_K03ZS5 Lib AA071E1X Aven... 24 5.9
gb|BE439242.1|BE439242 CDO735_WHE03B09R ITEC CDO Oat cDNA L... 28 7.1
gb|CN815989.1|CN815989 HRO4515_F08_L15ZS5 Lib AA071E1X Aven... 28 7.1
gb|CN816390.1|CN816390 HRO4520_B09_D18ZS5 Lib AA071E1X Aven... 28 7.1
gb|CN817139.1|CN817139 HRO4528_F09_L18ZS5 Lib AA071E1X Aven... 28 7.1
gb|CN818121.1|CN818121 HRO4456_F06_K12ZS5 Lib AA070E1X Aven... 28 7.1
gb|CN818385.1|CN818385 HRO4469_D01_H01ZS5 Lib AA070E1X Aven... 28 7.1
gb|CN819713.1|CN819713 HRO4403_C06_F11ZS5 Lib AA069E1X Aven... 28 7.1
gb|CN820257.1|CN820257 HRO4417_C11_E21ZS5 Lib AA069E1X Aven... 28 7.1
gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Aven... 28 7.1
gb|AM071402.1|AM071402 AM071402 Avena sativa leaf 3 weeks o... 28 7.1
gb|AF140553.1|AF140553 Avena sativa DNA-binding protein WRK... 28 7.1
gb|CN818813.1|CN818813 HRO4473_G02_XXXZS5 Lib AA070E1X Aven... 25 9.0
gb|BE439362.1|BE439362 CDO1196_WHE05E10R ITEC CDO Oat cDNA ... 27 9.7
gb|CN814701.1|CN814701 HRO4501_E10_I19ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN814909.1|CN814909 HRO4503_G11_N21ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN815698.1|CN815698 HRO4514_E08_I16ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN815940.1|CN815940 HRO4515_B07_D13ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN816603.1|CN816603 HRO4522_F11_K22ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN816909.1|CN816909 HRO4526_B05_C10ZS5 Lib AA071E1X Aven... 27 9.7
gb|CN817301.1|CN817301 HRO4464_H06_O12ZS5 Lib AA070E1X Aven... 27 9.7
gb|CN819039.1|CN819039 HRO4474_A11_B22ZS5 Lib AA070E1X Aven... 27 9.7
gb|CN820484.1|CN820484 HRO4419_H05_P09ZS5 Lib AA069E1X Aven... 27 9.7
gb|CN821002.1|CN821002 HRO4422_D09_G18ZS5 Lib AA069E1X Aven... 27 9.7
gb|CN821388.1|CN821388 HRO4424_G04_N08ZS5 Lib AA069E1X Aven... 27 9.7
emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA 27 9.7
emb|AJ251050.1|AFA251050 Avena fatua mRNA for VIP1 protein ... 27 9.7
>gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D03_H05, mRNA sequence
Length = 633
Score = 215 bits (463), Expect = 3e-056
Identities = 88/119 (73%), Positives = 106/119 (89%)
Frame = +1 / +3
Query: 1435 IGYVDDGDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHPSIVDAAVVQMKDDSCGEIPV 1614
IG+VDD DEIFIVDRLKE+IKYKGFQVAPAELEA+LI HP I DAAVV +KDD CGE+PV
Sbjct: 12 IGFVDDDDEIFIVDRLKEIIKYKGFQVAPAELEALLITHPDIKDAAVVGVKDDLCGEVPV 191
Query: 1615 AFVVASGGSGITEDEIKQYVAKQVVFYKRLHKIFFVEAIPKAPSGKILRKDLRAKLASG 1791
AF+ GS ITE+EIKQ+V+K+VVFYKR++K++F ++IPK PSGKILRKDLRA+LA+G
Sbjct: 192 AFIKRIEGSEITENEIKQFVSKEVVFYKRINKVYFTDSIPKNPSGKILRKDLRARLAAG 368
Score = 138 bits (297), Expect = 2e-033
Identities = 71/119 (59%), Positives = 75/119 (63%)
Frame = -2 / -3
Query: 1790 PDASFALRSFLKILPDGALGMASTKKILCSLL*NTTCFATYCLISSSVIPEPPDATTNAT 1611
P AS AL+SFL+ILP+G LGM S K L LL* TT T CLIS SVI +P AT
Sbjct: 367 PAASLALKSFLRILPEGFLGMESVK*TLLILL*KTTSLETNCLISFSVISDPSIRLMKAT 188
Query: 1610 GISPQESSFIWTTAASTMLGWXXXXXXXXXXATWNPLYLMSSLSRSTMKISSPSSTYPM 1434
G SPQ SSF TTAAS M G ATW PLYLM SLS STMKISS SST PM
Sbjct: 187 GTSPQRSSFTPTTAASLMSGCVMRRASSSAGATWKPLYLMISLSLSTMKISSSSSTKPM 11
Score = 79.9 bits (168), Expect(2) = 6e-020
Identities = 44/85 (51%), Positives = 51/85 (60%)
Frame = -1 / -2
Query: 1773 SQILP*NLAGWRLGDGLHEEDLVQPLVEHHLFRHVLLDLVLGDPGAAGRHDERHRDLAAG 1594
SQ+LP*+LAG LG+G+ E DLV PLVE++L LLDLVLGD DE R AA
Sbjct: 350 SQVLP*DLAGRVLGNGVGEVDLVDPLVENNLLGDELLDLVLGDLRPFDPLDEGDRHFAAE 171
Query: 1593 VILHLXXXXXXXXXXXDEHGLELRR 1519
+ILH DE GLELRR
Sbjct: 170 IILHSYDGGVLDVRVRDEEGLELRR 96
Score = 40.0 bits (81), Expect(2) = 9e-007
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +3 / +2
Query: 1662 QAVRGETGGVLQEAAQDLLRGGHPQGAIRQDFKEGSESKA 1781
QA+R + G LQE Q LL H Q RQD KEG ES+A
Sbjct: 239 QAIRLQGGCFLQEDQQGLLHRLHSQEPFRQDPKEGLESQA 358
Score = 36.8 bits (74), Expect = 0.012
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3 / -1
Query: 1780 ALLSDPSLKSCRMAPWGWPPRRRSCAASC 1694
A LS PSL SCR W W R C +SC
Sbjct: 357 AWLSSPSLGSCRKGSWEWSR*SRPC*SSC 271
Score = 33.6 bits (67), Expect(2) = 6e-020
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3 / -1
Query: 1534 PRAPPERLGTPCT**AP*A 1478
PRAPP G+PCT**+P*A
Sbjct: 111 PRAPPAPPGSPCT**SP*A 55
Score = 32.2 bits (64), Expect(2) = 9e-007
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3 / +2
Query: 1479 AQGAHQVQGVPSRSGGA 1529
AQG HQVQG+P +GGA
Sbjct: 56 AQGDHQVQGLPGGAGGA 106
>gb|CN816052.1|CN816052 HRO4516_D03_H06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_D03_H06, mRNA sequence
Length = 547
Score = 126 bits (269), Expect = 2e-029
Identities = 51/75 (68%), Positives = 66/75 (88%)
Frame = +1 / +2
Query: 1567 AAVVQMKDDSCGEIPVAFVVASGGSGITEDEIKQYVAKQVVFYKRLHKIFFVEAIPKAPS 1746
AAVV +KDD CGE+PVAF+ GS ITE+EIKQ+V+K+VVFYKR++K++F ++IPK PS
Sbjct: 11 AAVV*VKDDLCGEVPVAFIKRIEGSEITENEIKQFVSKEVVFYKRINKVYFTDSIPKNPS 190
Query: 1747 GKILRKDLRAKLASG 1791
GKILRKDLRA+LA+G
Sbjct: 191 GKILRKDLRARLAAG 235
Score = 90.0 bits (190), Expect = 1e-018
Identities = 45/75 (60%), Positives = 49/75 (65%)
Frame = -2 / -2
Query: 1790 PDASFALRSFLKILPDGALGMASTKKILCSLL*NTTCFATYCLISSSVIPEPPDATTNAT 1611
P AS AL+SFL+ILP+G LGM S K L LL* TT T CLIS SVI +P AT
Sbjct: 234 PAASLALKSFLRILPEGFLGMESVK*TLLILL*KTTSLETNCLISFSVISDPSIRLMKAT 55
Query: 1610 GISPQESSFIWTTAA 1566
G SPQ SSF TTAA
Sbjct: 54 GTSPQRSSFTHTTAA 10
Score = 74.8 bits (157), Expect = 4e-014
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = -1 / -1
Query: 1773 SQILP*NLAGWRLGDGLHEEDLVQPLVEHHLFRHVLLDLVLGDPGAAGRHDERHRDLAAG 1594
SQ+LP*+LAG LG+G+ E DLV PLVE++L LLDLVLGD + DE RD AA
Sbjct: 217 SQVLP*DLAGRVLGNGVGEVDLVDPLVENNLLGDELLDLVLGDLRSFDPLDEGDRDFAAE 38
Query: 1593 VILH 1582
+ILH
Sbjct: 37 IILH 26
Score = 40.0 bits (81), Expect = 0.001
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = +3 / +1
Query: 1662 QAVRGETGGVLQEAAQDLLRGGHPQGAIRQDFKEGSESKA 1781
QA+R + G LQE Q LL H Q RQD KEG ES+A
Sbjct: 106 QAIRLQGGCFLQEDQQGLLHRLHSQEPFRQDPKEGLESQA 225
Score = 36.8 bits (74), Expect = 0.012
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3 / -3
Query: 1780 ALLSDPSLKSCRMAPWGWPPRRRSCAASC 1694
A LS PSL SCR W W R C +SC
Sbjct: 224 AWLSSPSLGSCRKGSWEWSR*SRPC*SSC 138
>gb|BE439236.1|BE439236 CDO1462_WHE03G08R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1462_WHE03G08, mRNA sequence
Length = 227
Score = 56.1 bits (116), Expect = 2e-008
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +1 / +2
Query: 1408 SEGWLHTGDIGYVDDGDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHPSIVDAAVVQMK 1587
+ GW H+GD+G D I + DR+K++I G ++ E+E ++ HP +++A+VV
Sbjct: 32 AHGWYHSGDLGVGDPDLYIEVKDRMKDIIISGGENISTLEVEKVVHMHPEVLEASVVARA 211
Query: 1588 DDSCG 1602
D+ G
Sbjct: 212 DERWG 226
>gb|CN819945.1|CN819945 HRO4409_A01_A01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_A01_A01, mRNA
sequence
Length = 558
Score = 43.2 bits (88), Expect = 1e-004
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1 / +1
Query: 1330 GEICIRGKQLMKGYLNNPEATAKTIDSEGWLHTGDIGYVDDGDEIFIVDR 1479
GE+CIR L K Y PE T ++ G+ TGD VD+ I+ R
Sbjct: 121 GELCIRSPSLFKEYWKRPEVTEESFIDGGFFKTGDTVTVDEDGYFVILGR 270
Score = 34.5 bits (69), Expect = 0.060
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -2 / -2
Query: 1505 PLYLMSSLSRSTMKISSPSSTYPMSPVCSHPSESMVFAVASGLLRYPFINCLPLMQISP 1329
P ++MS+ R + SST +SPV P +V SGL +Y L+Q SP
Sbjct: 296 PTFMMSAFVRPKITKYPSSSTVTVSPVLKKPPSINDSSVTSGLFQYSLKRDGLLIQSSP 120
>gb|M83381.1|ASTAVEC A.sativa avenin mRNA, complete cds
Length = 875
Score = 29.9 bits (59), Expect(3) = 0.001
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3 / +2
Query: 1212 GVCQGAVTGEVRCLRHGGEECRAKDHR 1292
GVC G+VRC+R CR + R
Sbjct: 602 GVCAAGPAGDVRCIRPTAVPCRHRPSR 682
Score = 26.7 bits (52), Expect(3) = 0.001
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1 / +2
Query: 733 PYSSGTTGLPKGVMLSHRGLVTSVA 807
P S+ TTGLP + GL SVA
Sbjct: 452 PASAATTGLPASAATATTGLPASVA 526
Score = 24.0 bits (46), Expect(3) = 0.001
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1 / +2
Query: 472 AATTANPLHTPPEIAKQAAASGATVVITEPA 564
+A T P+ P Q + SGA + +PA
Sbjct: 221 SAATVEPVQAIPCATVQPSGSGAVPPVADPA 313
>gb|CN819999.1|CN819999 HRO4409_G05_M09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_G05_M09, mRNA
sequence
Length = 580
Score = 29.0 bits (57), Expect(2) = 0.067
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1 / +1
Query: 1672 VAKQVVFYKRLHKIFFVEAIPKAPSGKILRKDLR 1773
V Q+ + KI + +PK SGKI+R+ LR
Sbjct: 124 VRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 225
Score = 22.6 bits (43), Expect(2) = 0.067
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1 / +1
Query: 1564 DAAVVQMKDDSCGEIPVAFVVASGGSGITEDEIKQYVAK 1680
+AAVV ++ + G+ AFV G +E+ K +AK
Sbjct: 7 EAAVVGVEHEVKGQGIYAFVTLVDGVPYSEELRKSLIAK 123
>gb|M38722.1|ASTAVEB A.sativa avenin mRNA, complete cds
Length = 889
Score = 28.6 bits (56), Expect(2) = 0.16
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1 / +1
Query: 442 AFLACSRLGAAATTANPLHTPPEIAKQAAASGATVVITEPA 564
A A + + +A T P+ P Q SGA + +PA
Sbjct: 211 AIAATTIVAGSAATVEPMQAVPRATVQPGGSGAVPPVADPA 333
Score = 25.8 bits (50), Expect(2) = 0.16
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3 / +1
Query: 1212 GVCQGAVTGEVRCLRHGGEEC 1274
GVC G+VRC+R C
Sbjct: 631 GVCAAGPAGDVRCIRPTALPC 693
>emb|X99262.1|ASBLPHREC A.sativa gene encoding blue-light photoreceptor, intron
Length = 646
Score = 27.6 bits (54), Expect(2) = 0.38
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3 / +3
Query: 1435 CLRCAATPPSRWSSPLPPGC 1376
C R + T S WS+PL P C
Sbjct: 33 CSRPSGTSASAWSTPLRPCC 92
Score = 24.9 bits (48), Expect(2) = 0.38
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2 / +3
Query: 1163 PSTARGSLARSRSCSSLPMGAAPEMTMRTDERS 1065
P TAR A++R CS L A + R+ RS
Sbjct: 363 P*TARRQTAQTRRCSPLTCTLASLTSARSSTRS 461
>gb|CN816102.1|CN816102 HRO4517_A06_A11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A06_A11, mRNA sequence
Length = 822
Score = 30.9 bits (61), Expect = 0.76
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2 / -2
Query: 923 RIPHSRMECSEYTWNMGSTQRTTSSSRKWRFGLSPSTSCATLVTSPRCDS 774
R+ + + S TW GS S++ WR G S S T ++ R S
Sbjct: 653 RVRGNAVRTSRTTWQTGSLPVARSTASVWRCGTSTSACWTTCSSTQRTPS 504
Score = 27.6 bits (54), Expect = 7.1
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -2 / -2
Query: 1130 RSCSSLPMGAAPEMTMRTDERSWRSMASLLTISTAMGSTSGTIVMPCLFTSSNMRR 963
R CS P +RT +W++ + + STA GT C T S+ +R
Sbjct: 680 RHCSVAPCLRVRGNAVRTSRTTWQTGSLPVARSTASVWRCGTSTSACWTTCSSTQR 513
>gb|CN819703.1|CN819703 HRO4403_B08_D15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B08_D15, mRNA
sequence
Length = 335
Score = 30.9 bits (61), Expect = 0.76
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3 / +2
Query: 1936 VHG*LLLVYTVFCIYIFFSLFSIKKFTKIG 1847
VHG ++ V+T+ C+YI+ ++ K K G
Sbjct: 203 VHGCVICVWTILCVYIYDTICMYK*INKDG 292
>gb|CN819824.1|CN819824 HRO4404_E03_J06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_E03_J06, mRNA
sequence
Length = 678
Score = 30.9 bits (61), Expect = 0.76
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3 / +2
Query: 1936 VHG*LLLVYTVFCIYIFFSLFSIKKFTKIG 1847
VHG ++ V+T+ C+YI+ ++ K K G
Sbjct: 542 VHGCVICVWTILCVYIYDTICMYK*INKDG 631
>gb|U57787.1|ASU57787 Avena sativa permatin precursor mRNA, complete cds
Length = 846
Score = 30.9 bits (61), Expect = 0.76
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2 / -2
Query: 1106 PWARSCRTCCAPSSLAPCSDRVMG*QRQARCSRCA 1210
PW R CR C P+S A R +R++R R A
Sbjct: 380 PWPRPCRACTPPASPAAARTRGRPARRRSRP*RSA 276
>gb|CN818562.1|CN818562 HRO4466_H05_P10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_H05_P10, mRNA sequence
Length = 649
Score = 26.3 bits (51), Expect(2) = 0.92
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -2 / +1
Query: 938 SAAPARIPHSRMECSEYTWNMGSTQRTTSSSRKWRFGLSPSTSCATLVTSPRCD 777
+ +P+ +P + + + + R T +S R +S S C T +SPR D
Sbjct: 316 ATSPSALPRATQTPARSSAYSRACSRPTPTSAPRRPRMSRSRVCGTRSSSPRAD 477
Score = 24.9 bits (48), Expect(2) = 0.92
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3 / +1
Query: 1423 AATPPSRWSSPLPPGC*GTLSSTACP*CKSPRAGCGGGTARSPG 1292
+ TPPS SS C + S++ SPRA G + + G
Sbjct: 49 STTPPSPCSSLEASACHSSSPSSSSSPPASPRASAGHSSCPATG 180
>emb|AJ010728.1|AFA010728 Avena fatua alpha-Amy2A gene, exons 1-4
Length = 3694
Score = 28.1 bits (55), Expect(2) = 0.96
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1 / +3
Query: 1122 QLLAHGRGPRDDHAHRREVVAVDGVALDHLHRDGQHERHDRDAVPLHQL 976
+L GR H H+ V + G A LH G+H R P H L
Sbjct: 2055 RLPRQGRPRHRRHRHQPPVRRLQGQARHLLHLRGRHPRQPSRLGPPHDL 2201
Score = 25.4 bits (49), Expect(2) = 0.96
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / +2
Query: 1303 RSPGR*SLARHSSPP 1259
RSPGR* + R S PP
Sbjct: 395 RSPGR*WMGRRSRPP 439
>gb|CN815771.1|CN815771 HRO4510_C11_E22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_C11_E22, mRNA sequence
Length = 423
Score = 30.4 bits (60), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / -3
Query: 1091 SRGPRPWARSCRTCCAPSS 1147
S +PW R C TCC P S
Sbjct: 97 SEQSQPWHRRCWTCCHPGS 41
>gb|CN816275.1|CN816275 HRO4518_H07_O14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H07_O14, mRNA sequence
Length = 717
Score = 30.4 bits (60), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / +2
Query: 1091 SRGPRPWARSCRTCCAPSS 1147
S +PW R C TCC P S
Sbjct: 320 SEQSQPWHRRCWTCCHPGS 376
>gb|CN817704.1|CN817704 HRO4459_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_F11_K21, mRNA sequence
Length = 439
Score = 30.4 bits (60), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / -3
Query: 1091 SRGPRPWARSCRTCCAPSS 1147
S +PW R C TCC P S
Sbjct: 149 SEQSQPWHRRCWTCCHPGS 93
>gb|CN819371.1|CN819371 HRO4405_B10_C19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_B10_C19, mRNA
sequence
Length = 461
Score = 30.4 bits (60), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / -1
Query: 1091 SRGPRPWARSCRTCCAPSS 1147
S +PW R C TCC P S
Sbjct: 134 SEQSQPWHRRCWTCCHPGS 78
>gb|CN820333.1|CN820333 HRO4418_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B10_C20, mRNA
sequence
Length = 592
Score = 30.4 bits (60), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / -1
Query: 1091 SRGPRPWARSCRTCCAPSS 1147
S +PW R C TCC P S
Sbjct: 283 SEQSQPWHRRCWTCCHPGS 227
>gb|CN821666.1|CN821666 HRO4408_H02_P04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_H02_P04, mRNA
sequence
Length = 536
Score = 30.4 bits (60), Expect = 1.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / -1
Query: 1091 SRGPRPWARSCRTCCAPSS 1147
S +PW R C TCC P S
Sbjct: 209 SEQSQPWHRRCWTCCHPGS 153
>gb|CK780254.1|CK780254 umn214 UMN cDNA from oat Avena sativa cDNA clone JMT4_E11 5', mRNA
sequence
Length = 649
Score = 25.8 bits (50), Expect(2) = 1.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +1
Query: 1212 GVCQGAVTGEVRCLRHGGEECRAKDHR 1292
GVC +VRC+R CR + R
Sbjct: 394 GVCAAGPASDVRCVRPTALPCRYRPAR 474
Score = 24.9 bits (48), Expect(2) = 1.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1 / +1
Query: 472 AATTANPLHTPPEIAKQAAASGATVVITEPA 564
+A T P+ P Q + SGA I +PA
Sbjct: 7 SAATVEPVQAVPCATVQPSGSGAVPPIADPA 99
>gb|CN814943.1|CN814943 HRO4504_B09_D18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_B09_D18, mRNA sequence
Length = 802
Score = 29.9 bits (59), Expect = 1.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2 / -3
Query: 1487 SLSRSTMKISSPSSTYPMSPVCSHPSES 1404
S S S PS++YP P C+ PS +
Sbjct: 497 SFGGSVGSASHPSTSYPQQPPCTEPSSA 414
>gb|CN814961.1|CN814961 HRO4504_D03_H06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_D03_H06, mRNA sequence
Length = 606
Score = 29.9 bits (59), Expect = 1.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2 / +1
Query: 1487 SLSRSTMKISSPSSTYPMSPVCSHPSES 1404
S S S PS++YP P C+ PS +
Sbjct: 259 SFGGSVGSASHPSTSYPQQPPCTEPSSA 342
>gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_F01_L02, mRNA sequence
Length = 525
Score = 29.9 bits (59), Expect = 1.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3 / -3
Query: 1273 HSSPPCRRHRTSPVTAPWQTPCTS 1202
H PPC HR P T+ ++T TS
Sbjct: 406 HRYPPCCSHRVPPSTSQYRTLVTS 335
>gb|CN815345.1|CN815345 HRO4508_F07_L14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_F07_L14, mRNA sequence
Length = 394
Score = 29.9 bits (59), Expect = 1.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3 / -1
Query: 1272 CRAKDHRPGDRAVPPPQPARGDLHQGQAVDERVPQQPG 1385
C PG R +P PARG G+ P++PG
Sbjct: 232 CGWPGRSPGGRRIPAR*PARGGSAAGRRTGRARPRRPG 119
>gb|CN816188.1|CN816188 HRO4517_H10_O19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_H10_O19, mRNA sequence
Length = 407
Score = 29.9 bits (59), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2 / -3
Query: 1103 RPWARSCRTCCAPSS 1147
+PW R C TCC P S
Sbjct: 108 QPWHRRCWTCCHPGS 64
>gb|CN817112.1|CN817112 HRO4528_D03_H06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_D03_H06, mRNA sequence
Length = 520
Score = 29.9 bits (59), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2 / -1
Query: 1103 RPWARSCRTCCAPSS 1147
+PW R C TCC P S
Sbjct: 187 QPWHRRCWTCCHPGS 143
>gb|CN817923.1|CN817923 HRO4462_A08_B16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_A08_B16, mRNA sequence
Length = 841
Score = 29.9 bits (59), Expect = 1.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1 / +1
Query: 1674 HVLLDLVLGDPGAAGRHDERHRDLAAG 1594
H+L++ + G P ++ +H HRD AAG
Sbjct: 481 HLLVNRISGRPSSSLKHGPIHRDSAAG 561
>gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_E10_I20, mRNA sequence
Length = 836
Score = 29.9 bits (59), Expect = 1.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3 / -1
Query: 18 PYTSILAHSSDPGPAPPTRPEAASLLSPAR 107
P ++ A + P PAPP P AA+ P R
Sbjct: 269 PAAAVAATAHFPSPAPPAPPAAAAARPPLR 180
Score = 27.6 bits (54), Expect = 7.1
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1 / +1
Query: 1404 DGLRRCLRVVEVPFHQLLAPDANLPGLVAVEGQPGLRVD 1288
D R LR V P Q L PDA+ PG+R+D
Sbjct: 322 DAARAHLRGVHRPGDQRLRPDADGQAHAHARPHPGVRLD 438
>gb|CN819496.1|CN819496 HRO4406_G08_M16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_G08_M16, mRNA
sequence
Length = 801
Score = 29.9 bits (59), Expect = 1.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2 / -2
Query: 1487 SLSRSTMKISSPSSTYPMSPVCSHPSES 1404
S S S PS++YP P C+ PS +
Sbjct: 554 SFGGSVGSASHPSTSYPQQPPCTEPSSA 471
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
Length = 1448
Score = 24.4 bits (47), Expect(2) = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2 / +2
Query: 1175 P*PCPSTARGSLARSRSCSSLPMGAA 1098
P P PS AR + + + CSS P AA
Sbjct: 524 PRPAPSRARRTRSWAPWCSSSPAPAA 601
Score = 22.1 bits (42), Expect(2) = 1.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1 / +3
Query: 1020 QHERHDRDAVPLHQLEH 970
Q ERH + LH+L H
Sbjct: 642 QPERHGHELRALHRLRH 692
>gb|CN814646.1|CN814646 HRO4501_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_A01_A01, mRNA sequence
Length = 573
Score = 29.5 bits (58), Expect = 2.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2 / -2
Query: 1490 SSLSRSTMKISSPSSTYPMSPVCSHPSESMVFAVASGLLRYPFINCLPLMQ 1338
+ +S+ KIS + + H SES VF++++ LLR I + +M+
Sbjct: 446 ADISQQDFKISMRELLLQLISLSFHGSESWVFSISNDLLRNIIIVVIVIMR 294
>gb|CN821232.1|CN821232 HRO4423_A03_B05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_A03_B05, mRNA
sequence
Length = 697
Score = 26.3 bits (51), Expect(2) = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +1
Query: 1276 RHSSPPCRRHRTSPVTAP 1223
RH + P RRH T+P AP
Sbjct: 118 RHLTAPHRRHLTAPHPAP 171
Score = 23.5 bits (45), Expect(2) = 2.4
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -2 / +2
Query: 86 CCFRPGW 66
CCF PGW
Sbjct: 503 CCFCPGW 523
>dbj|AB059557.2| Avena sativa MIP mRNA for myo-inositol-1-phosphate synthase, complete
cds
Length = 1936
Score = 25.8 bits (50), Expect(2) = 2.4
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2 / +3
Query: 1676 ATYCLISSSVIPEPPDATTNATGISPQESSFIWTTAAS 1563
AT S S P P T+ T SP +W AA+
Sbjct: 165 ATTAHPSGSSAPSPSTTTSRPTPTSPSSG*CLWAGAAT 278
Score = 25.4 bits (49), Expect(2) = 2.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3 / +1
Query: 1321 CGGGTARSPGR*SLARHSSPPCRRHRTSPV 1232
CGG R AR + PCRRH+ V
Sbjct: 1144 CGG*HGRKQQHPLRARGAP*PCRRHQVCAV 1233
>gb|CN821435.1|CN821435 HRO4425_C08_E15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C08_E15, mRNA
sequence
Length = 708
Score = 25.4 bits (49), Expect(2) = 2.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3 / +2
Query: 51 PGPAPPTRPEAASLLSPARNSSLQRH 128
P P P P+AA+ + R+ QRH
Sbjct: 29 PRPLRPNHPDAAAHVPQGRDLRRQRH 106
Score = 24.4 bits (47), Expect(2) = 2.4
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2 / +1
Query: 1223 RSRYR*SPVPAARW*GMPS*RSSTRRPGCPSTATS 1327
RSR R SP P + RSSTR STA S
Sbjct: 181 RSRSRCSPSPPSSSSSRTPSRSSTRSSRSTSTARS 285
>gb|CN820070.1|CN820070 HRO4410_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G05_M10, mRNA
sequence
Length = 721
Score = 26.3 bits (51), Expect(2) = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 1276 RHSSPPCRRHRTSPVTAP 1223
RH + P RRH T+P AP
Sbjct: 116 RHLTAPHRRHLTAPHPAP 169
Score = 23.5 bits (45), Expect(2) = 2.4
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -2 / +3
Query: 86 CCFRPGW 66
CCF PGW
Sbjct: 501 CCFCPGW 521
>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
Length = 2073
Score = 26.7 bits (52), Expect(2) = 2.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2 / +2
Query: 1316 WRDSPVSGSMIFSSAFLTTVPQAPDFTGNGSLANA 1212
++D+ +M A +T +APD GNG NA
Sbjct: 572 YQDAGSMDAMTTRPASFSTPYEAPDMVGNGGYNNA 676
Score = 24.4 bits (47), Expect(2) = 2.5
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2 / +3
Query: 476 AAAPRREHARNASANSTEFGRSSITVPPLRTPRQARIPAATRR 348
AAAPRR +R +A + T P R R P RR
Sbjct: 828 AAAPRRRWSRPRTAR*PRSCTRARTTTPSRRTRAGAPPRLRRR 956
>gb|CN815144.1|CN815144 HRO4506_D03_G06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_D03_G06, mRNA sequence
Length = 577
Score = 29.0 bits (57), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3 / +1
Query: 1429 RCAATPPSRWSSPLPPGC*GTLSSTACP*CKSPRAGCGGGTAR 1301
R T S S+P P + +S +CP SPR+G T R
Sbjct: 175 RARPTTRSSPSAPTTPSTGTSTTSRSCPLTASPRSGDSSRTTR 303
>gb|CN816588.1|CN816588 HRO4522_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_E05_I10, mRNA sequence
Length = 852
Score = 29.0 bits (57), Expect = 2.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3 / +3
Query: 24 TSILAHSSDPGPAPPTRPEAASLLSPA 104
+S+L HSS APP+RP S SP+
Sbjct: 504 SSLLCHSSGLQRAPPSRPVGFSSPSPS 584
>gb|CN817447.1|CN817447 HRO4465_H12_P23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_H12_P23, mRNA sequence
Length = 597
Score = 29.0 bits (57), Expect = 2.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2 / +1
Query: 1088 SSRGPRPWARSCRTCCAPSSLAPC 1159
S+ P PW RSC PS + C
Sbjct: 67 SAASPTPWCRSCGRWTCPSRRSTC 138
>gb|CN819950.1|CN819950 HRO4409_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_A07_A13, mRNA
sequence
Length = 594
Score = 29.0 bits (57), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1 / +3
Query: 1672 VAKQVVFYKRLHKIFFVEAIPKAPSGKILRKDLR 1773
V Q+ + KI + +PK SGKI+R+ LR
Sbjct: 114 VRSQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 215
>gb|CN820451.1|CN820451 HRO4419_E06_J11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_E06_J11, mRNA
sequence
Length = 535
Score = 29.0 bits (57), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1 / +1
Query: 1672 VAKQVVFYKRLHKIFFVEAIPKAPSGKILRKDLR 1773
V Q+ + KI + +PK SGKI+R+ LR
Sbjct: 76 VRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 177
>gb|BE439197.1|BE439197 CDO938_WHE03C03R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO938_WHE03C03, mRNA sequence
Length = 248
Score = 28.6 bits (56), Expect = 3.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2 / -3
Query: 1292 SMIFSSAFLTTVPQAPDFTGNGSLANAMHIESTGPASVIP*PCPST 1155
S +FS L T+P + + + S+ + + T P S IP PC S+
Sbjct: 222 SGLFSRRILKTLPSSSSYL*SLSVPSHGYWVVTVPPSTIPSPCSSS 85
>gb|CN815095.1|CN815095 HRO4505_G11_M21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_G11_M21, mRNA sequence
Length = 303
Score = 28.6 bits (56), Expect = 3.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2 / +1
Query: 1508 NPLYLMSSLSRSTMKISSPSSTYPMSPVCSHPSE 1407
+P S SRS++ S+ ST P SP S PSE
Sbjct: 16 SPTEAGSPASRSSLWRSTRGSTSPASPRSSRPSE 117
>gb|CN815499.1|CN815499 HRO4512_C12_F24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_C12_F24, mRNA sequence
Length = 668
Score = 28.6 bits (56), Expect = 3.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2 / -1
Query: 71 GWWSWTWIGAMCKDGC 24
GWW WT+ A + GC
Sbjct: 665 GWWCWTFQLAFIRPGC 618
>gb|CN815856.1|CN815856 HRO4511_C05_F09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_C05_F09, mRNA sequence
Length = 733
Score = 28.6 bits (56), Expect = 3.7
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2 / -1
Query: 1985 FFFTQT*TFIYLD 1947
FFFTQT T+IY+D
Sbjct: 412 FFFTQTNTYIYID 374
>gb|CN815865.1|CN815865 HRO4511_D02_H03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_D02_H03, mRNA sequence
Length = 585
Score = 28.6 bits (56), Expect = 3.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2 / -3
Query: 1292 SMIFSSAFLTTVPQAPDFTGNGSLANAMHIESTGPASVIP*PCPST 1155
S +FS L T+P + + + S+ + + T P S IP PC S+
Sbjct: 205 SGLFSRRILKTLPSSSSYL*SLSVPSHGYWVVTVPPSTIPSPCSSS 68
>gb|CN816507.1|CN816507 HRO4521_E10_I19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_E10_I19, mRNA sequence
Length = 847
Score = 28.6 bits (56), Expect = 3.7
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2 / -1
Query: 1094 RGPRPWARSCRTCCAPSSLAP 1156
R R WAR C CC +P
Sbjct: 493 RSSRAWARRCTACCRSPGQSP 431
>gb|CN816945.1|CN816945 HRO4526_E09_I18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E09_I18, mRNA sequence
Length = 795
Score = 28.6 bits (56), Expect = 3.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2 / -1
Query: 1292 SMIFSSAFLTTVPQAPDFTGNGSLANAMHIESTGPASVIP*PCPST 1155
S +FS L T+P + + + S+ + + T P S IP PC S+
Sbjct: 240 SGLFSRRILKTLPSSSSYL*SLSVPSHGYWVVTVPPSTIPSPCSSS 103
>gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A01_B02, mRNA sequence
Length = 600
Score = 28.6 bits (56), Expect = 3.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3 / -1
Query: 18 PYTSILAHSSDPGPAPPTRPEAASLLSPARNSSL 119
P TS ++ PGP+PPT A+ L + SS+
Sbjct: 261 PTTSPTLSTTTPGPSPPTSSLASKSLLVSSTSSV 160
>gb|CN818895.1|CN818895 HRO4473_C11_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_C11_XXX, mRNA sequence
Length = 741
Score = 28.6 bits (56), Expect = 3.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2 / -1
Query: 1292 SMIFSSAFLTTVPQAPDFTGNGSLANAMHIESTGPASVIP*PCPST 1155
S +FS L T+P + + + S+ + + T P S IP PC S+
Sbjct: 189 SGLFSRRILKTLPSSSSYL*SLSVPSHGYWVVTVPPSTIPSPCSSS 52
>gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E01_I02, mRNA
sequence
Length = 387
Score = 28.6 bits (56), Expect = 3.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3 / +1
Query: 18 PYTSILAHSSDPGPAPPTRPEAASLLSPARNSSL 119
P TS ++ PGP+PPT A+ L + SS+
Sbjct: 112 PTTSPTLSTTTPGPSPPTSSLASKSLLVSSTSSV 213
>gb|CN817667.1|CN817667 HRO4463_A06_A11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_A06_A11, mRNA sequence
Length = 372
Score = 26.3 bits (51), Expect(2) = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3 / +3
Query: 1315 GGTARSPGR*SLARHSSPPCRRHRTSPVTAPWQTPCTSRAP 1193
G RS R + R SS + + APWQT + R+P
Sbjct: 9 GSRPRSRTRRASPRTSSASSSLASSLRMAAPWQTTTSRRSP 131
Score = 21.7 bits (41), Expect(2) = 4.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = -2 / +3
Query: 131 RVALEAGVTCRRQEACCFRPGW 66
RV ++ GVT CC W
Sbjct: 273 RVVVKCGVTLSLTNFCCGAATW 338
>gb|CN815801.1|CN815801 HRO4510_F06_K12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_F06_K12, mRNA sequence
Length = 347
Score = 28.1 bits (55), Expect = 5.1
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1 / +3
Query: 1275 GIPHHRAAGTGLHR*RLLGKRHAHREHRAC 1186
G H R HR L G RH H HR C
Sbjct: 30 GRGHARLHHRRRHRRLLHGARHRHHPHRPC 119
>gb|CN815942.1|CN815942 HRO4515_B09_D17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B09_D17, mRNA sequence
Length = 470
Score = 28.1 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3 / +1
Query: 48 DPGPAPPTRPEAASLLSPARNSS 116
DP APP RP ++ + +R+SS
Sbjct: 115 DPAAAPPPRPSSSPTAASSRSSS 183
>gb|CN816020.1|CN816020 HRO4516_A06_B12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A06_B12, mRNA sequence
Length = 837
Score = 28.1 bits (55), Expect = 5.1
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / -2
Query: 1689 HHLFRHVLLDL 1657
HHL RHVLLDL
Sbjct: 314 HHLLRHVLLDL 282
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 28.1 bits (55), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3 / +3
Query: 1245 RCLRHGGEECRAKDHRPGDRAVPPPQPARG 1334
R + G + A H PGD + PP+P RG
Sbjct: 138 RVRQAGPLQQEAHHHLPGDPDLRPPRPPRG 227
>gb|U80041.1|AFU80041 Avena fatua Af10-protein mRNA, complete cds
Length = 2103
Score = 28.1 bits (55), Expect = 5.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3 / -2
Query: 36 AHSSDPGPAPPTRPEAA 86
A SSDP P PPT P +A
Sbjct: 1748 ALSSDPSPRPPTIPTSA 1698
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 25.4 bits (49), Expect(2) = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3 / -2
Query: 1339 KSPRAGCGGGTARSPGR* 1286
++PR G GG + SPGR*
Sbjct: 300 RAPRGGQGGRRSGSPGR* 247
Score = 23.1 bits (44), Expect(2) = 5.3
Identities = 5/12 (41%), Positives = 7/12 (58%)
Frame = -2 / -2
Query: 65 WSWTWIGAMCKD 30
W+W W C+D
Sbjct: 162 WTWPWRRCRCRD 127
>gb|CN815612.1|CN815612 HRO4513_F02_K03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_F02_K03, mRNA sequence
Length = 734
Score = 24.4 bits (47), Expect(2) = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1 / -2
Query: 78 PAGLVELDLDRSYVQGWMYMAG 13
P G VE++ SY+QG +Y G
Sbjct: 175 PCGCVEVEG*ESYLQGGVYDEG 110
Score = 24.0 bits (46), Expect(2) = 5.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2 / -2
Query: 1172 *PCPSTARGSLARSRSC 1122
*PCP G RSR C
Sbjct: 220 *PCPQPREGDTWRSRPC 170
>gb|BE439242.1|BE439242 CDO735_WHE03B09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO735_WHE03B09, mRNA sequence
Length = 227
Score = 27.6 bits (54), Expect = 7.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2 / +2
Query: 95 QEACCFRPGWWSWTW 51
QE+ C WWSW W
Sbjct: 167 QESYCCICSWWSW*W 211
>gb|CN815989.1|CN815989 HRO4515_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_F08_L15, mRNA sequence
Length = 809
Score = 27.6 bits (54), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2 / +2
Query: 11 KPAIYIHPCT*LRSRSSSTNPAGSSKP 91
+PA PC+ RSR++ST A SS P
Sbjct: 668 RPASRA*PCSARRSRTASTPTAWSSSP 748
>gb|CN816390.1|CN816390 HRO4520_B09_D18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_B09_D18, mRNA sequence
Length = 856
Score = 27.6 bits (54), Expect = 7.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2 / -2
Query: 1331 PGWLRWRDSPVSGSMIFSSAFLTTVPQAPDFTGNGSLANAMHIESTGP 1188
P L + V+G++I SSA+ T+P F+ + I GP
Sbjct: 153 PSLLLTHERKVAGALIVSSAYAGTIPS*CSFSSTHHGLHGKTIPDIGP 10
>gb|CN817139.1|CN817139 HRO4528_F09_L18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_F09_L18, mRNA sequence
Length = 377
Score = 27.6 bits (54), Expect = 7.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2 / +1
Query: 1094 RGPRPWARSCRTCCAPSSLAPCSDR 1168
RGP W+ + R C P S A R
Sbjct: 25 RGPTTWSSTPRAACTPRSTAATGKR 99
>gb|CN818121.1|CN818121 HRO4456_F06_K12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4456_F06_K12, mRNA
sequence
Length = 618
Score = 27.6 bits (54), Expect = 7.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2 / +1
Query: 65 WSWTWIGAMCKDGCIW 18
WS WI +C GC W
Sbjct: 49 WSSPWISELCIAGCRW 96
>gb|CN818385.1|CN818385 HRO4469_D01_H01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_D01_H01, mRNA sequence
Length = 419
Score = 27.6 bits (54), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2 / -2
Query: 1274 PS*RSSTRRPGCPSTATSP 1330
PS RSS R P CPS P
Sbjct: 136 PSWRSSPRAPSCPSRGAVP 80
>gb|CN819713.1|CN819713 HRO4403_C06_F11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C06_F11, mRNA
sequence
Length = 398
Score = 27.6 bits (54), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / +2
Query: 18 PYTSILAHSSDPGPAPPTRPEAASLLSPARNS 113
P TS ++ PGP+PPT A+ L + +S
Sbjct: 122 PTTSPTPSTTTPGPSPPTSSPASKSLVRSTSS 217
>gb|CN820257.1|CN820257 HRO4417_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_C11_E21, mRNA
sequence
Length = 476
Score = 27.6 bits (54), Expect = 7.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3 / +3
Query: 18 PYTSILAHSSDPGPAPPTRPEAASLLSPARNS 113
P TS ++ PGP+PPT A+ L + +S
Sbjct: 207 PTTSPTPSTTTPGPSPPTSSPASKSLVRSTSS 302
>gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B10_C20, mRNA
sequence
Length = 726
Score = 27.6 bits (54), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2 / -3
Query: 968 RRVSKRFMITSAAPARIPHSRMECSEYTW 882
RR ++RF+ ++AP P + CS W
Sbjct: 205 RRAARRFISAASAPRVPPGNARRCSNSPW 119
>gb|AM071402.1|AM071402 AM071402 Avena sativa leaf 3 weeks old, post-germination Avena sativa
cDNA clone ASCID1-1_016_f08, mRNA sequence
Length = 592
Score = 27.6 bits (54), Expect = 7.1
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = -3 / -3
Query: 1324 GCGGGTARSPGR*SLARHSSPPCRRHRTSPVTAPWQTPCT 1205
GC G AR R + S CR R P P P T
Sbjct: 212 GCRGSAARRRRRRAPRPRRSRRCRARRAPPCAGPGSRPPT 93
>gb|AF140553.1|AF140553 Avena sativa DNA-binding protein WRKY3 (wrky3) mRNA, complete cds
Length = 1206
Score = 27.6 bits (54), Expect = 7.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3 / -3
Query: 1258 CRRHRTSPVTAPWQTPCTSRAPGLPLSS 1175
C R+ A W C+S P LP+ S
Sbjct: 133 CSMPRSPAAAASWMATCSSALPYLPIRS 50
>gb|CN818813.1|CN818813 HRO4473_G02_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_G02_XXX, mRNA sequence
Length = 615
Score = 25.4 bits (49), Expect(2) = 9.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3 / -1
Query: 66 PTRPEAASLLSPARNSSLQRHTYTSAGSEEDGVAYGAAGRDNGVPLDAS 212
P+R LSP + ++ T AG+ + A AA R+ P A+
Sbjct: 372 PSRLLLRPRLSPVPSVDIRSSTSAKAGAADTVTAVAAASREAPAPRTAA 226
Score = 22.1 bits (42), Expect(2) = 9.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2 / -3
Query: 1097 GPRPWARSCRTCCAPSSLAPCS 1162
G R A C CC S+ PCS
Sbjct: 79 GHRCCAVLCCWCC*LESVMPCS 14
>gb|BE439362.1|BE439362 CDO1196_WHE05E10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1196_WHE05E10, mRNA sequence
Length = 495
Score = 27.2 bits (53), Expect = 9.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +1
Query: 1109 WARSCRTCC 1135
WARSC TCC
Sbjct: 304 WARSCWTCC 330
>gb|CN814701.1|CN814701 HRO4501_E10_I19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_E10_I19, mRNA sequence
Length = 448
Score = 27.2 bits (53), Expect = 9.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 856 VVLCVLPMFHVYSLHSILLCGMRA 927
V+ ++ HV++LH I++C RA
Sbjct: 362 VIYFLVRTMHVWTLHVIIVCAFRA 433
>gb|CN814909.1|CN814909 HRO4503_G11_N21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G11_N21, mRNA sequence
Length = 920
Score = 27.2 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3 / +3
Query: 1288 *SLARHSSPPCRRHRTSPVTAPWQTPCTSRA 1196
*SL R +SP C R R + + P+ P R+
Sbjct: 585 *SLTRRASPKCTRRRHARLFHPYHKPNRRRS 677
>gb|CN815698.1|CN815698 HRO4514_E08_I16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_E08_I16, mRNA sequence
Length = 761
Score = 27.2 bits (53), Expect = 9.7
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -2 / +2
Query: 1832 ERTQGHQHDDPLENPDASFAL 1770
ER Q H D ENP ASFAL
Sbjct: 323 EREQATIHIDLNENPGASFAL 385
>gb|CN815940.1|CN815940 HRO4515_B07_D13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B07_D13, mRNA sequence
Length = 817
Score = 27.2 bits (53), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 920 IPHSRMECSEYTWNMGSTQRTT 855
I +ECSEYTW + T + T
Sbjct: 707 IERGALECSEYTWILYFTTQPT 772
>gb|CN816603.1|CN816603 HRO4522_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_F11_K22, mRNA sequence
Length = 816
Score = 27.2 bits (53), Expect = 9.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -2 / -3
Query: 77 RPGWWSWTWIGAMCK 33
RP WW +W G C+
Sbjct: 679 RPTWWRRSWSGRRCR 635
>gb|CN816909.1|CN816909 HRO4526_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_B05_C10, mRNA sequence
Length = 417
Score = 27.2 bits (53), Expect = 9.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -2 / -3
Query: 104 CRRQEACCFRPGWW 63
C +AC PGWW
Sbjct: 394 CGTAKACTLHPGWW 353
>gb|CN817301.1|CN817301 HRO4464_H06_O12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H06_O12, mRNA sequence
Length = 804
Score = 27.2 bits (53), Expect = 9.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2 / -2
Query: 1103 RPWARSCRTCC 1135
+PW R C TCC
Sbjct: 467 QPWRRRCSTCC 435
>gb|CN819039.1|CN819039 HRO4474_A11_B22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_A11_B22, mRNA sequence
Length = 559
Score = 27.2 bits (53), Expect = 9.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2 / -3
Query: 1100 PRPWARSCRTCCAPSSLAP 1156
P P AR+CR C PS AP
Sbjct: 68 PCP*ARTCRRRCCPS*AAP 12
>gb|CN820484.1|CN820484 HRO4419_H05_P09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_H05_P09, mRNA
sequence
Length = 551
Score = 27.2 bits (53), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3 / -2
Query: 1243 TSPVTAPWQTPCTSRAPGLPLSSHN 1169
+ P+ PC GLPLSSH+
Sbjct: 310 SGPLALRVSVPCIGMPAGLPLSSHH 236
>gb|CN821002.1|CN821002 HRO4422_D09_G18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D09_G18, mRNA
sequence
Length = 453
Score = 27.2 bits (53), Expect = 9.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2 / +2
Query: 1112 ARSCRTCCAPSSLAPCSDR 1168
ARSCR C A SS++ S R
Sbjct: 35 ARSCRRCSAASSISARSSR 91
>gb|CN821388.1|CN821388 HRO4424_G04_N08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G04_N08, mRNA
sequence
Length = 428
Score = 27.2 bits (53), Expect = 9.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2 / +2
Query: 32 PCT*LRSRSSSTNPAGSSKPLVSCT 106
P + RS SSS++PAGSS C+
Sbjct: 38 PSSCRRSASSSSSPAGSSSGSACCS 112
>emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA
Length = 1520
Score = 27.2 bits (53), Expect = 9.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2 / -1
Query: 1163 PSTARGSLARSRSCSSLPMGAAPEMTMRTDERSWRSMA 1050
P+ + R+ S P AAP + R+ RSWRS A
Sbjct: 785 PARGTSA*PRTPSSCRSPTTAAPGRSRRS*GRSWRSAA 672
>emb|AJ251050.1|AFA251050 Avena fatua mRNA for VIP1 protein (vip1 gene)
Length = 1061
Score = 27.2 bits (53), Expect = 9.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2 / -1
Query: 1085 WSSRGPRPWARSCRTCCAPSSLAPCSDR 1168
W R WA + R+ + ++LA CS R
Sbjct: 308 WEKSPSRRWASAARSLFSLAALASCSSR 225
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 17,355,595
Number of Sequences: 8143
Number of extensions: 247878
Number of successful extensions: 1863
Number of sequences better than 10.0: 87
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 739848032
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)