TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424526.2.1
(1446 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817298.1|CN817298 HRO4458_D05_H10ZS5 Lib AA070E1X Aven... 183 5e-047
>gb|CN817298.1|CN817298 HRO4458_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_D05_H10, mRNA sequence
Length = 554
Score = 183 bits (395), Expect = 5e-047
Identities = 73/109 (66%), Positives = 88/109 (80%)
Frame = -1 / +3
Query: 819 TVLAADDPRAENKVLYIKPPANTLSHNELLSLWEKKTGKTFRREYVPEEAVLKQIQESPI 640
T+ A DDPR NK+LY++PP+NTLS NEL+SLWEKK GKT R Y+PE VLK IQESP
Sbjct: 3 TIKAVDDPRTLNKILYLRPPSNTLSLNELVSLWEKKHGKTLARVYIPESEVLKNIQESPA 182
Query: 639 PLNIILAIGHAAFVRGEQTGFEIDPAKGVDASELYPDVKYTTVDEYLNR 493
PLN+ LAI H+ +V+G+ T FEIDP+ GV+A+ELYPDV Y TVDEYLNR
Sbjct: 183 PLNVALAICHSVWVKGDHTNFEIDPSFGVEATELYPDVHYITVDEYLNR 329
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,325,169
Number of Sequences: 8143
Number of extensions: 115387
Number of successful extensions: 667
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 523658672
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)