TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3866402.2.1
         (406 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818432.1|CN818432  HRO4460_F09_K18ZS5 Lib AA070E1X Aven...   144   5e-036
gb|CN821039.1|CN821039  HRO4422_H02_O04ZS5 Lib AA069E1X Aven...   100   9e-023

>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
          Length = 869

 Score =  144 bits (310), Expect = 5e-036
 Identities = 55/82 (67%), Positives = 70/82 (85%)
 Frame = -3 / +3

                                                                       
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
           TGW IL I+QA +PV++  GLWGSV+AL+R YE +MG+++F P+ VL+WFPFVSEFQ R+
Sbjct: 435 TGWGILLIAQACRPVLRVAGLWGSVRALARAYEVIMGVLLFTPITVLSWFPFVSEFQTRM 614

                                 
Query: 224 LFNQAFSRGLQISRILAGGKKQ 159
           LFNQAFSRGLQISRIL G K++
Sbjct: 615 LFNQAFSRGLQISRILGGQKER 680



>gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_H02_O04, mRNA
           sequence
          Length = 700

 Score =  100 bits (214), Expect = 9e-023
 Identities = 40/95 (42%), Positives = 60/95 (63%)
 Frame = -3 / +2

                                                                       
Query: 404 TGWAILQISQASKPVIKAFGLWGSVKALSRGYEYLMGIVIFVPVAVLAWFPFVSEFQARL 225
           TGW +L I Q  +P I+ + +W  ++ ++  Y+Y MG ++F P+A+LAW P +S  Q R+
Sbjct: 134 TGWGLLLIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPIAILAWMPIISAIQTRV 313

                                              
Query: 224 LFNQAFSRGLQISRILAGGKKQR*C*FRKHSYTRV 120
           LFN+AFSR LQI   + G  K++*    K   TRV
Sbjct: 314 LFNRAFSRQLQIQPFIVGKTKRK*LMVFKRFGTRV 418



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,321,437
Number of Sequences: 8143
Number of extensions: 75285
Number of successful extensions: 3028
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 41
effective length of database: 1,233,624
effective search space used: 114727032
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)