TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3858636.2.1
         (907 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814756.1|CN814756  HRO4502_B07_C14ZS5 Lib AA071E1X Aven...   210   3e-055

>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_B07_C14, mRNA sequence
          Length = 620

 Score =  210 bits (453), Expect = 3e-055
 Identities = 84/108 (77%), Positives = 97/108 (89%)
 Frame = +2 / +1

                                                                       
Query: 299 EKDASASVFSKINRFEEELREALPREMEAARVAFETGAAPIANRIKESRSYPLYRFIRQD 478
           E +  A+VFSKI +FEEELR ALPRE+EAARVAFETG API N IKESRS+PLYRF+R++
Sbjct: 7   EAEGEATVFSKITKFEEELRSALPREIEAARVAFETGTAPIPNLIKESRSFPLYRFVREE 186

                                                           
Query: 479 LGAVYLTGEKLKSPGEECNKVFLALSEGKLIDPMLDCLKEWDGKPLPI 622
           LG VYLTGEKL SPGEECNKVFL +S+GKLIDPML+CLKEW+G+PLPI
Sbjct: 187 LGCVYLTGEKLLSPGEECNKVFLGISQGKLIDPMLECLKEWNGEPLPI 330




 Score =  137 bits (293), Expect = 3e-033
 Identities = 69/115 (60%), Positives = 69/115 (60%)
 Frame = -2 / -1

                                                                       
Query: 642 HRWRPQQMGRGLPSHSLRQSSMGSMSLPSLRARNTLLHSSPGDLSFSPVRYTAPRSWRMK 463
           HR     MGRG P HSLR SSMGSMSLP L  RNTLLHSSPGD SFSPVRYT P S R K
Sbjct: 350 HRAL*TLMGRGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVRYTQPSSSRTK 171

                                                                  
Query: 462 RYSGYDRLSLILLAIGAAPVSKATXXXXXXXXXXXXXXXXXXXXLENTDALASFS 298
           RYSG D LSLI   IGA PVSKAT                    LENT A  S S
Sbjct: 170 RYSGKDLLSLIRFGIGAVPVSKATRAASISRGSAERSSSSNLVILENTVASPSAS 6




 Score =  122 bits (260), Expect = 1e-028
 Identities = 61/106 (57%), Positives = 67/106 (63%)
 Frame = -1 / -3

                                                                       
Query: 640 PVASSADGQGLAVPLLEAVEHGVDELALAEGQEHXXXXXXXXXXXXXGQVHGAEVLADEA 461
           P A   DGQGLAVPLLEA++HGVDELALA+ QEH             G+VH A++LADEA
Sbjct: 348 PRALDVDGQGLAVPLLEALQHGVDELALADAQEHLVALLAGGQEFLAGEVHAAQLLADEA 169

                                                         
Query: 460 VQRVRPALLDPVGDRRXXXXXXXXXXXXXXGQRLAQLLLEPVDLGE 323
           VQR RPALLD V DRR              GQR AQLLLE  DLGE
Sbjct: 168 VQRERPALLDQVRDRRGAGLEGDAGGLDLPGQRRAQLLLELGDLGE 31



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,300,475
Number of Sequences: 8143
Number of extensions: 97141
Number of successful extensions: 850
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 314073204
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)