TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742548.2.1
(554 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Aven... 114 1e-026
>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C02_E03, mRNA sequence
Length = 660
Score = 114 bits (243), Expect = 1e-026
Identities = 41/98 (41%), Positives = 58/98 (59%)
Frame = -1 / +1
Query: 542 CQVLGYDVPAGITVIVNAWAIGRDPAPWDEPXKFLPERFEQSTRDFKGADFEFIPFGAGR 363
C+++GY++P G + +NA+AI DP WD P +F PERFE + ++ G F+F PFG+GR
Sbjct: 256 CEIMGYNIPKGTNIYINAFAISHDPVFWDNPTEFNPERFENNNVNYDGTHFKFTPFGSGR 435
Query: 362 RICPGMTFGXXXXXXXXXXXXXXFDWSLPGGLTAEELD 249
RICPG+ F FDW LP G + L+
Sbjct: 436 RICPGIFFATSTIEIALANLLYHFDWKLPDGERVDMLE 549
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,728,363
Number of Sequences: 8143
Number of extensions: 74696
Number of successful extensions: 1389
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 174018302
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)