TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670912.2.1
(844 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 173 4e-044
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 173 bits (372), Expect = 4e-044
Identities = 67/108 (62%), Positives = 88/108 (81%)
Frame = +2 / +1
Query: 242 ERDVDTSIFAKVAEFEQQVRAALPKEVEAARAAVENGSPLVPNRIKECRSYPLYRFVREE 421
E + + ++F+K+ +FE+++R+ALP+E+EAAR A E G+ +PN IKE RS+PLYRFVREE
Sbjct: 7 EAEGEATVFSKITKFEEELRSALPREIEAARVAFETGTAPIPNLIKESRSFPLYRFVREE 186
Query: 422 VGTEYLTGEKTRSPGEELNKVLVAINQRKHIDPLLECLKEWNGEPLPL 565
+G YLTGEK SPGEE NKV + I+Q K IDP+LECLKEWNGEPLP+
Sbjct: 187 LGCVYLTGEKLLSPGEECNKVFLGISQGKLIDPMLECLKEWNGEPLPI 330
Score = 136 bits (291), Expect = 6e-033
Identities = 65/107 (60%), Positives = 70/107 (65%)
Frame = -2 / -1
Query: 561 GRGSPFHSLRHSSSGSMCLRWLMATSTLFSSSPGDLVFSPVRYSVPTSSRTNRYSG*DRH 382
GRGSPFHSLRHSS GSM L WLM +TL SSPGD FSPVRY+ P+SSRT RYSG D
Sbjct: 326 GRGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVRYTQPSSSRTKRYSGKDLL 147
Query: 381 SLILLGTRGLPFSTAARAASTSLGSAARTCCSNSATLAKMDVSTSRS 241
SLI G +P S A RAAS S GSA R+ SN L S S S
Sbjct: 146 SLIRFGIGAVPVSKATRAASISRGSAERSSSSNLVILENTVASPSAS 6
Score = 111 bits (238), Expect = 1e-025
Identities = 56/87 (64%), Positives = 59/87 (67%)
Frame = -1 / -3
Query: 559 QGLAVPLLEALEQRVDVLALVDGHEHLVQLLAGRPRLLAGQVLGADLLAHEPVQRVGPAL 380
QGLAVPLLEAL+ VD LAL D EHLV LLAG LAG+V A LLA E VQR PAL
Sbjct: 324 QGLAVPLLEALQHGVDELALADAQEHLVALLAGGQEFLAGEVHAAQLLADEAVQRERPAL 145
Query: 379 LDPVGDQRAAVLHGRARGFHLLGQRRA 299
LD V D+R A L G A G L GQRRA
Sbjct: 144 LDQVRDRRGAGLEGDAGGLDLPGQRRA 64
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,321,148
Number of Sequences: 8143
Number of extensions: 87311
Number of successful extensions: 901
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 288509106
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)