TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Aven... 171 1e-043
>gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_H10_O20, mRNA
sequence
Length = 657
Score = 171 bits (368), Expect = 1e-043
Identities = 71/83 (85%), Positives = 78/83 (93%)
Frame = +3 / +1
Query: 111 TSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMP 290
TS +VLQTDKGDEELCSVYVPTNHLYIGDIFL+NS EIIRPNLSIREGIEIIVSGGMTMP
Sbjct: 19 TSNVVLQTDKGDEELCSVYVPTNHLYIGDIFLLNSDEIIRPNLSIREGIEIIVSGGMTMP 198
Query: 291 QVIMSLEPTPRKSQNVRLDRVRT 359
QVI SLEP P+KSQ++RL+R+ T
Sbjct: 199 QVIASLEPIPKKSQSIRLNRINT 267
Score = 129 bits (276), Expect = 6e-031
Identities = 56/83 (67%), Positives = 68/83 (81%)
Frame = -3 / -2
Query: 358 VLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK* 179
V L R WLF G+GSSD ITCG+VIPP+TIIS+PSR+DK GL+IS+ F++ +SPIY+*
Sbjct: 266 VFILFSRMLWLFFGMGSSDAITCGMVIPPDTIISIPSRMDKFGLMISSLFSRNISPIYR* 87
Query: 178 LVGT*TLHNSSSPLSV*RTMVDV 110
VGT*TL +SSSPLSV*RT DV
Sbjct: 86 FVGT*TLQSSSSPLSV*RTTFDV 18
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,773,727
Number of Sequences: 8143
Number of extensions: 132035
Number of successful extensions: 978
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 254423642
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)