TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3562100.2.1
         (759 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820087.1|CN820087  HRO4410_H10_O20ZS5 Lib AA069E1X Aven...   171   1e-043
>gb|CN820087.1|CN820087 HRO4410_H10_O20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4410_H10_O20, mRNA
           sequence
          Length = 657

 Score =  171 bits (368), Expect = 1e-043
 Identities = 71/83 (85%), Positives = 78/83 (93%)
 Frame = +3 / +1

                                                                       
Query: 111 TSTMVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSAEIIRPNLSIREGIEIIVSGGMTMP 290
           TS +VLQTDKGDEELCSVYVPTNHLYIGDIFL+NS EIIRPNLSIREGIEIIVSGGMTMP
Sbjct: 19  TSNVVLQTDKGDEELCSVYVPTNHLYIGDIFLLNSDEIIRPNLSIREGIEIIVSGGMTMP 198

                                  
Query: 291 QVIMSLEPTPRKSQNVRLDRVRT 359
           QVI SLEP P+KSQ++RL+R+ T
Sbjct: 199 QVIASLEPIPKKSQSIRLNRINT 267

 Score =  129 bits (276), Expect = 6e-031
 Identities = 56/83 (67%), Positives = 68/83 (81%)
 Frame = -3 / -2

                                                                       
Query: 358 VLTLSKRTFWLFRGVGSSDMITCGIVIPPETIISMPSRIDKLGLIISAEFTKKMSPIYK* 179
           V  L  R  WLF G+GSSD ITCG+VIPP+TIIS+PSR+DK GL+IS+ F++ +SPIY+*
Sbjct: 266 VFILFSRMLWLFFGMGSSDAITCGMVIPPDTIISIPSRMDKFGLMISSLFSRNISPIYR* 87

                                  
Query: 178 LVGT*TLHNSSSPLSV*RTMVDV 110
            VGT*TL +SSSPLSV*RT  DV
Sbjct: 86  FVGT*TLQSSSSPLSV*RTTFDV 18
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 8,773,727
Number of Sequences: 8143
Number of extensions: 132035
Number of successful extensions: 978
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 254423642
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)