TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276111.2.1
(1393 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Aven... 88 3e-026
>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
sequence
Length = 644
Score = 87.7 bits (185), Expect(4) = 3e-026
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +1 / -1
Query: 823 IEMGGSLQFYSGGVFSGQCGTRMNHAITVVGYGADSSSGLKYWLVKNSWGQSWGERGYLR 1002
IE+ S Y GV+SG CG NH +T+VGYG D+S+G KYW+VKNS G S+G GY+
Sbjct: 392 IEVAVSFAKYKSGVYSGPCGYAYNHIVTIVGYGTDASTGKKYWIVKNSHGTSFGMGGYIL 213
Query: 1003 MRRDV 1017
R V
Sbjct: 212 FERGV 198
Score = 33.1 bits (66), Expect(4) = 3e-026
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 643 WVIQNGGLTTEANYP 687
W+ +NGG+TTEA+YP
Sbjct: 575 WIWKNGGITTEADYP 531
Score = 29.0 bits (57), Expect(4) = 3e-026
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1 / -1
Query: 1027 GLCGIALDLAYPVV*FIYYHRMH 1095
GLCGIA YP +* I++ + H
Sbjct: 185 GLCGIASSPVYPTM*CIWHCKQH 117
Score = 24.9 bits (48), Expect(4) = 3e-026
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / -3
Query: 571 EQELIDCDPYD 603
EQEL+DC YD
Sbjct: 642 EQELVDCGQYD 610
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,260,366
Number of Sequences: 8143
Number of extensions: 120400
Number of successful extensions: 661
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 506652705
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)