TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3148257.2.1
         (675 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818432.1|CN818432  HRO4460_F09_K18ZS5 Lib AA070E1X Aven...   129   4e-031
gb|CN821039.1|CN821039  HRO4422_H02_O04ZS5 Lib AA069E1X Aven...   111   2e-025

>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
          Length = 869

 Score =  129 bits (277), Expect = 4e-031
 Identities = 49/93 (52%), Positives = 68/93 (73%)
 Frame = +3 / +3

                                                                       
Query: 129 IIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPVALL 308
           I DIF  +LAF+PTGWG++ IAQ  RP +    +W S+ ++AR YE+++GV +  P+ +L
Sbjct: 396 IRDIFVCILAFLPTGWGILLIAQACRPVLRVAGLWGSVRALARAYEVIMGVLLFTPITVL 575

                                            
Query: 309 SWLPGFQEMQTRVLFNEGFSRGLQISRILTGKR 407
           SW P   E QTR+LFN+ FSRGLQISRIL G++
Sbjct: 576 SWFPFVSEFQTRMLFNQAFSRGLQISRILGGQK 674



>gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_H02_O04, mRNA
           sequence
          Length = 700

 Score =  111 bits (236), Expect = 2e-025
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +3 / +2

                                                                       
Query: 120 EFQIIDIFTSLLAFIPTGWGLISIAQVIRPFIESTVVWDSIISVARLYEILLGVFIMAPV 299
           +  I+D+    LAFIPTGWGL+ I QV+RP IE   +W+ I  +A  Y+  +G  +  P+
Sbjct: 86  KLSIMDLIICCLAFIPTGWGLLLIVQVLRPKIEYYAIWEPIQVIAHAYDYGMGSLLFFPI 265

                                              
Query: 300 ALLSWLPGFQEMQTRVLFNEGFSRGLQISRILTGK 404
           A+L+W+P    +QTRVLFN  FSR LQI   + GK
Sbjct: 266 AILAWMPIISAIQTRVLFNRAFSRQLQIQPFIVGK 370



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,676,569
Number of Sequences: 8143
Number of extensions: 110037
Number of successful extensions: 1058
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 223037542
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)