TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106166.2.1
(715 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Aven... 159 6e-040
>gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D03_H05, mRNA sequence
Length = 633
Score = 159 bits (341), Expect = 6e-040
Identities = 59/116 (50%), Positives = 91/116 (78%)
Frame = -2 / +3
Query: 660 IGYFDEGGQLFVVDRLKELIKYKGFQIAPAELEGLLLSHPEILDAVVIPFPDAEAGEVPI 481
IG+ D+ ++F+VDRLKE+IKYKGFQ+APAELE LL++HP+I DA V+ D GEVP+
Sbjct: 12 IGFVDDDDEIFIVDRLKEIIKYKGFQVAPAELEALLITHPDIKDAAVVGVKDDLCGEVPV 191
Query: 480 AYVVRSSESSLTEVDVQKFIEKQVAYYKKLRRVTFVDSVPKSASGKILRRELISKV 313
A++ R S +TE ++++F+ K+V +YK++ +V F DS+PK+ SGKILR++L +++
Sbjct: 192 AFIKRIEGSEITENEIKQFVSKEVVFYKRINKVYFTDSIPKNPSGKILRKDLRARL 359
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,442,405
Number of Sequences: 8143
Number of extensions: 113348
Number of successful extensions: 1144
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 236163572
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)