TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3067267.2.1
         (893 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819995.1|CN819995  HRO4409_F10_K19ZS5 Lib AA069E1X Aven...    79   2e-021

>gb|CN819995.1|CN819995 HRO4409_F10_K19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4409_F10_K19, mRNA
           sequence
          Length = 797

 Score = 78.5 bits (165), Expect(3) = 2e-021
 Identities = 33/91 (36%), Positives = 57/91 (62%)
 Frame = +3 / +2

                                                                       
Query: 327 TKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPDARHAMFEELLPYTPGTMEIPY 506
           +K ++ + +L ATN P++LD A++RRL +RI V LP+   R  + + LL       +  +
Sbjct: 137 SKENQRILILGATNRPFDLDDAVIRRLPRRIYVGLPDAQNRKKILKILLAKENLEADFKF 316

                                          
Query: 507 DVLVEKTEGYSGSDIRLVCKEAAMQPLRRVM 599
           D L   TEGYSGSD++ +C  +A +P++ ++
Sbjct: 317 DELANATEGYSGSDLKNLCIASAYRPVQELL 409




 Score = 28.6 bits (56), Expect(3) = 2e-021
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3 / +2

                               
Query: 204 APSTIFLDEIDAIISQRGEA 263
           AP  IF+DE+D+++  RG A
Sbjct: 14  APVIIFVDEVDSLLGARGGA 73




 Score = 27.6 bits (54), Expect(3) = 2e-021
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3 / +2

                              
Query: 270 EHEASRRLKTELLIQMDGL 326
           EHEA+R+++ E +   DGL
Sbjct: 77  EHEATRKMRNEFMAAWDGL 133



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 10,747,561
Number of Sequences: 8143
Number of extensions: 157863
Number of successful extensions: 903
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 309203852
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)