TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949673.2.1
(636 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Aven... 76 5e-027
>gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_H05_P09, mRNA sequence
Length = 842
Score = 76.2 bits (160), Expect(2) = 5e-027
Identities = 34/69 (49%), Positives = 44/69 (63%)
Frame = -2 / -3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
V STS KRDEA+ LGAD F++S D +QM + +L ++DT S DHP P L LLK
Sbjct: 696 VFSTSESKRDEAISLLGADNFVLSSDEKQMGSLKNSLHFIVDTASGDHPFDPYLALLKVG 517
Query: 455 GQMVVVGLP 429
G M ++G P
Sbjct: 516 GVMALLGFP 490
Score = 59.3 bits (123), Expect(2) = 5e-027
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = -2 / -3
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q M++F + I D+E++ +DY+N A++RL DVRYRFV+D+ S
Sbjct: 411 DTQEMMNFCAANKIYPDIELIKIDYINEALERLVNRDVRYRFVIDIESS 265
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,057,925
Number of Sequences: 8143
Number of extensions: 79517
Number of successful extensions: 1768
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 207106289
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)