TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814884.1|CN814884 HRO4503_E08_J15ZS5 Lib AA071E1X Aven... 96 3e-049
gb|CN820657.1|CN820657 HRO4415_H08_P15ZS5 Lib AA069E1X Aven... 173 4e-045
gb|CN816079.1|CN816079 HRO4516_F12_L24ZS5 Lib AA071E1X Aven... 82 1e-038
gb|CN815880.1|CN815880 HRO4511_E05_J09ZS5 Lib AA071E1X Aven... 120 8e-037
gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Aven... 96 6e-035
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 71 9e-031
gb|CN814886.1|CN814886 HRO4503_E10_J19ZS5 Lib AA071E1X Aven... 99 1e-029
gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene ... 67 1e-029
gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene... 68 2e-029
gb|AY083679.1| Avena sativa clone OP10rc receptor kinase ge... 68 2e-029
emb|AJ629310.1| Avena strigosa partial s5.6 gene for recept... 81 4e-029
gb|CN815656.1|CN815656 HRO4514_A12_A24ZS5 Lib AA071E1X Aven... 61 9e-026
gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Aven... 82 2e-025
gb|AY038002.1| Avena sativa isolate Pc68LrkA receptor kinas... 52 4e-022
gb|BE439208.1|BE439208 CDO1158_WHE03F03R ITEC CDO Oat cDNA ... 101 4e-022
gb|CN814959.1|CN814959 HRO4504_D01_H02ZS5 Lib AA071E1X Aven... 66 2e-021
>gb|CN814884.1|CN814884 HRO4503_E08_J15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E08_J15, mRNA sequence
Length = 830
Score = 95.9 bits (203), Expect(4) = 3e-049
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = -1 / +1
Query: 776 GYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHD 606
GY APE MTGQ + KSDVYSFGVV+LELLTGR+P D + PR +QSLV WATP+L +
Sbjct: 310 GYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSE 480
Score = 68.0 bits (142), Expect(4) = 3e-049
Identities = 28/58 (48%), Positives = 40/58 (68%)
Frame = -1 / +1
Query: 983 LSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
LSW R+KIA+G+A+ LEYLHE P IIH++ KSSN+LL + ++D L++ P
Sbjct: 91 LSWVQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAP 264
Score = 55.6 bits (115), Expect(4) = 3e-049
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = -1 / +1
Query: 602 DALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLV 447
D + + VD L G +P K++++FA V ALCVQ E +FRP MS VV+AL L+
Sbjct: 481 DKVRQCVDSRLGGDFPPKAVAKFAAVAALCVQYEADFRPNMSIVVKALQPLL 636
Score = 29.0 bits (57), Expect(4) = 3e-049
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1 / +1
Query: 1058 LLVYDFHRNGSLHDLLH 1008
+L Y+F GSLHD+LH
Sbjct: 1 VLAYEFATMGSLHDMLH 51
>gb|CN820657.1|CN820657 HRO4415_H08_P15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_H08_P15, mRNA
sequence
Length = 788
Score = 173 bits (373), Expect(2) = 4e-045
Identities = 69/109 (63%), Positives = 90/109 (82%)
Frame = -1 / +3
Query: 773 YTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDAL 594
Y APEV + ++ +SDVYSFGVVMLELLTGR+P+DSSRPR+EQ LVRWA+ QL+ ID +
Sbjct: 111 YEAPEVHESRTFSDRSDVYSFGVVMLELLTGRKPYDSSRPRAEQHLVRWASTQLYGIDTI 290
Query: 593 DRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLV 447
+MVDP ++G K+LSRFADV++ C+Q EPEFRPP+SE+VQ L+R+V
Sbjct: 291 SKMVDPCIRGQCSEKALSRFADVISRCIQHEPEFRPPISEIVQDLIRMV 437
Score = 100 bits (213), Expect = 1e-021
Identities = 56/107 (52%), Positives = 65/107 (60%)
Frame = +1 / -2
Query: 448 TSRTNACTTSDIGGLNSGSGWTHRARTSANRDRDLAGYRPLSAGSTILSNASMSCSWGVA 627
T R + T S+IGGLNSGS R TSA RDR + + P GSTI S+ S +A
Sbjct: 436 TIRIRSWTISEIGGLNSGSC*IQRLITSAKRDRAFSEHCPRIQGSTIFDMVSIP*S*VLA 257
Query: 628 HRTSDCSDLGLELSNGLRPVNSSSMTTPKL*TSLLKVY*PVMSTSGA 768
HRT CS G ELS GLRPV SS++TTPKL*TSL + TSGA
Sbjct: 256 HRTRCCSARGRELSYGLRPVRSSNITTPKL*TSLRSLNVLDSCTSGA 116
Score = 24.9 bits (48), Expect(2) = 4e-045
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1 / +3
Query: 887 FKSSNILLDSEFNPHLSDAGLAS 819
F+ S ILL+S + +S+ GLAS
Sbjct: 3 FEPSIILLNSTLSVQISECGLAS 71
>gb|CN816079.1|CN816079 HRO4516_F12_L24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_F12_L24, mRNA sequence
Length = 827
Score = 81.7 bits (172), Expect(3) = 1e-038
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = -1 / +2
Query: 1010 HLSDEYSKPLSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDA 831
HL + L W R++IALG+A+ L Y+HE C P IIH++ KSSNILLD +F ++D
Sbjct: 83 HLHGKGRPTLEWPIRLRIALGAAKGLAYIHEDCHPKIIHRDIKSSNILLDFKFEAKVADF 262
Query: 830 GLASF 816
GLA F
Sbjct: 263 GLAKF 277
Score = 77.6 bits (163), Expect(3) = 1e-038
Identities = 32/55 (58%), Positives = 41/55 (74%)
Frame = -1 / +2
Query: 776 GYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQL 612
GY APE +G+ T KSDV+SFGV++LEL+TGRRP DS++ + SLV WA P L
Sbjct: 326 GYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDSNQTYMDDSLVDWARPLL 490
Score = 35.9 bits (72), Expect(3) = 1e-038
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1 / +2
Query: 1088 VGYCMEHGQHLLVYDFHRNGSLHDLLH 1008
VGYC+ G+ LLVY+F N +L LH
Sbjct: 11 VGYCISGGKRLLVYEFVTNNTLEFHLH 91
>gb|CN815880.1|CN815880 HRO4511_E05_J09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E05_J09, mRNA sequence
Length = 818
Score = 120 bits (257), Expect(3) = 8e-037
Identities = 53/116 (45%), Positives = 71/116 (61%)
Frame = -1 / +2
Query: 1160 QSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPL 981
Q F VS+I + H NL +L+G+C E LLVY+ NGSL+ L + S L
Sbjct: 197 QGEKQFRAEVSSIGLIQHINLVKLIGFCCEGDHRLLVYEHMLNGSLNSHLFMKSNNSVVL 376
Query: 980 SWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFI 813
SWN+R +IALG AR L YLH+ C IIH + K NIL+D+ F P ++D GLA+F+
Sbjct: 377 SWNTRYQIALGVARGLSYLHQSCHECIIHCDVKPENILVDASFVPKVADFGLAAFV 544
Score = 42.3 bits (86), Expect(3) = 8e-037
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / +2
Query: 782 SAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRR 675
+AGY APE T K DVY FG+V++E+++GRR
Sbjct: 584 TAGYLAPEWLSGVAITPKIDVYGFGMVLMEIISGRR 691
Score = 25.8 bits (50), Expect(3) = 8e-037
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3 / +1
Query: 1251 RGYFWTCLQGTIQ*WKGSGDQEIR*YCDA 1165
R +FW C+QG+++* E *+C +
Sbjct: 112 RRWFWFCIQGSVK*L*DYYSSEKA*WCQS 198
>gb|CN816284.1|CN816284 HRO4519_A04_B07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_A04_B07, mRNA sequence
Length = 747
Score = 95.9 bits (203), Expect(3) = 6e-035
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = -1 / +1
Query: 776 GYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHD 606
GY APE MTGQ + KSDVYSFGVV+LELLTGR+P D + PR +QSLV WATP+L +
Sbjct: 172 GYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSE 342
Score = 55.6 bits (115), Expect(3) = 6e-035
Identities = 26/52 (50%), Positives = 36/52 (69%)
Frame = -1 / +1
Query: 602 DALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLV 447
D + + VD L G +P K++++FA V ALCVQ E +FRP MS VV+AL L+
Sbjct: 343 DKVRQCVDSRLGGDFPPKAVAKFAAVAALCVQYEADFRPNMSIVVKALQPLL 498
Score = 30.9 bits (61), Expect(3) = 6e-035
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1 / +1
Query: 908 PSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
P IIH++ KSSN+LL + ++D L++ P
Sbjct: 28 PHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAP 126
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
sequence
Length = 16091
Score = 70.7 bits (148), Expect(3) = 3e-028
Identities = 30/63 (47%), Positives = 38/63 (60%)
Frame = -1 / -3
Query: 989 KPLSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
K SW+ +IALG AR + YLH+ C I+H + K NILLDS F P ++D GLA P
Sbjct: 5337 KSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVADFGLAKLYP 5158
Query: 809 GAE 801
E
Sbjct: 5157 RGE 5149
Score = 68.4 bits (143), Expect(4) = 9e-031
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = -1 / +3
Query: 965 IKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
+ IALG AR +EYLH+ C+ I+H + K NILLD FNP +SD GLA P
Sbjct: 11070 LDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKLCP 11225
Score = 51.9 bits (107), Expect(3) = 3e-028
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = -1 / -3
Query: 1157 SSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDE 996
+ +DF VS I ++HH N+ LVG+C E + LVY++ +GSL + +D+
Sbjct: 5496 NGEDFISEVSTIGRIHHVNVVRLVGFCAEEMRRALVYEYMPHGSLDKYIFSADK 5335
Score = 44.1 bits (90), Expect(4) = 9e-031
Identities = 16/29 (55%), Positives = 25/29 (86%)
Frame = -1 / +3
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFDSS 660
G+ ++KSDVYSFG+++LE+++GRR D S
Sbjct: 11307 GEISYKSDVYSFGMLVLEMVSGRRNSDPS 11393
Score = 42.8 bits (87), Expect(4) = 9e-031
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1 / +3
Query: 1145 FAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSD 999
F V+ I +HH N+ LVG+C E + L+Y+F N SL + D
Sbjct: 10884 FINEVAPIGLIHHANIVRLVGFCSEGTRRALIYEFMPNESLEKYIFSHD 11030
Score = 36.8 bits (74), Expect(3) = 3e-028
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -1 / -3
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFD 666
G + KSDVYSFG+++LE+ GRR D
Sbjct: 5076 GVISSKSDVYSFGMLLLEMAGGRRNAD 4996
Score = 29.9 bits (59), Expect(4) = 9e-031
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1 / +3
Query: 1268 FDNLVGEGTFGRVYRAQFNDGKVLAIKKLDST 1173
F +G+G +G VYR + + +A+K L+++
Sbjct: 10770 FKEKIGQGGYGSVYRGELQNRVPVAVKMLENS 10865
>gb|CN814886.1|CN814886 HRO4503_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E10_J19, mRNA sequence
Length = 889
Score = 98.7 bits (209), Expect(2) = 1e-029
Identities = 42/95 (44%), Positives = 59/95 (62%)
Frame = -1 / +2
Query: 1094 ELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNSRIKIALGSARALEYLHEI 915
+L G C+E LLVYD+ +GSL ++LH + PLSW ++IA+ +A AL YLH
Sbjct: 23 KLFGCCLETEVPLLVYDYVSSGSLSEVLHADADSGLPLSWGDYLRIAMETAGALSYLHSS 202
Query: 914 CSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
S SI H++ KSSNILLD + +SD G + +P
Sbjct: 203 ASISIFHRDVKSSNILLDGNYTAKVSDFGASRLVP 307
Score = 47.8 bits (98), Expect(2) = 1e-029
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = -1 / +2
Query: 776 GYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSL 636
GY PE T Q + KSDVYSFGVV++ELL +P + + QSL
Sbjct: 350 GYLDPEYFHTRQLSEKSDVYSFGVVLVELLLRMKPVFTGESGTVQSL 490
>gb|AY083680.1| Avena sativa clone OP9 receptor kinase gene cluster, complete
sequence
Length = 10607
Score = 67.0 bits (140), Expect(3) = 5e-027
Identities = 28/60 (46%), Positives = 36/60 (60%)
Frame = -1 / -1
Query: 989 KPLSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
K SW+ +IALG AR + YLH+ C I+H + K NILLD F P ++D GLA P
Sbjct: 9686 KIFSWDKLNEIALGIARGINYLHQGCEMQIVHFDIKPHNILLDGNFVPKVADFGLAKLYP 9507
Score = 65.7 bits (137), Expect(4) = 1e-029
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = -1 / +3
Query: 965 IKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLA 822
+ IALG AR +EYLH+ C+ I+H + K NILLD FNP +SD GLA
Sbjct: 3219 LDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLA 3362
Score = 45.5 bits (93), Expect(3) = 5e-027
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -1 / -1
Query: 1157 SSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSL 1023
+ +DF VS I ++HH N+ LVG+C + LVY++ GSL
Sbjct: 9845 NGEDFISEVSTIGRIHHVNVVRLVGFCS*EMRRALVYEYMPQGSL 9711
Score = 43.2 bits (88), Expect(4) = 1e-029
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1 / +3
Query: 1145 FAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSD 999
F V+ I +HH N+ LVG+C E + L+Y+F N SL + D
Sbjct: 3033 FINEVATIGLIHHANIVRLVGFCSEGTRRALLYEFMPNDSLEKYIFSPD 3179
Score = 42.8 bits (87), Expect(3) = 5e-027
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1 / -1
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQS 639
G + KSDVYSFG+++LE+ GRR DS+ S Q+
Sbjct: 9425 GVVSSKSDVYSFGMLLLEMAGGRRNADSNAANSSQA 9318
Score = 40.9 bits (83), Expect(4) = 1e-029
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = -1 / +3
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFD 666
G ++KSDVYSFG+++LE+++GRR D
Sbjct: 3456 GGISYKSDVYSFGMLVLEMVSGRRNSD 3536
Score = 31.3 bits (62), Expect(4) = 1e-029
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1 / +3
Query: 1256 VGEGTFGRVYRAQFNDGKVLAIKKLDST 1173
VG+G FG VY+ + +G +A+K L+++
Sbjct: 2931 VGQGGFGSVYKGELPNGVPVAVKVLENS 3014
>gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene cluster, complete
sequence
Length = 13990
Score = 68.0 bits (142), Expect(3) = 3e-027
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = -1 / -2
Query: 989 KPLSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
K SW+ +IALG AR + YLH+ C I+H + K NILLD+ F P ++D GLA P
Sbjct: 1773 KSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDTNFVPKVADFGLAKLYP 1594
Score = 67.5 bits (141), Expect(4) = 2e-029
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = -1 / +2
Query: 974 NSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLA 822
N + IALG AR +EYLH+ C+ I+H + K NILLD FNP +SD GLA
Sbjct: 8675 NKLLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLA 8827
Score = 48.7 bits (100), Expect(3) = 3e-027
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -1 / -2
Query: 1157 SSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSL 1023
+ +DF VS + ++HH N+ LVG+C E + LVY++ +GSL
Sbjct: 1932 NGEDFISEVSTLGRIHHVNVVRLVGFCSEELRRALVYEYMPHGSL 1798
Score = 42.3 bits (86), Expect(4) = 2e-029
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -1 / +2
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFDSS 660
G ++KSDVYSFG+++LE+++GRR D S
Sbjct: 8921 GGISYKSDVYSFGMLVLEMVSGRRNSDPS 9007
Score = 41.8 bits (85), Expect(4) = 2e-029
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1 / +2
Query: 1145 FAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSD 999
F V+ I +HH N+ L+G+C E + L+Y+F N SL + D
Sbjct: 8498 FINEVATIGLIHHANIVRLLGFCSEGMRRALIYEFMPNESLEKYIFSHD 8644
Score = 39.6 bits (80), Expect(3) = 3e-027
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -1 / -2
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQ 642
G + KSDVYSFG+++LE+ GRR D + S Q
Sbjct: 1512 GVISSKSDVYSFGMLLLEMAGGRRNADPNAAASSQ 1408
Score = 29.0 bits (57), Expect(4) = 2e-029
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1 / +2
Query: 1268 FDNLVGEGTFGRVYRAQFNDGKVLAIKKLDS 1176
F VG+G FG VY+ + + +A+K L++
Sbjct: 8384 FKEKVGQGGFGSVYKGELPNRVPVAVKMLEN 8476
>gb|AY083679.1| Avena sativa clone OP10rc receptor kinase gene cluster, complete
sequence
Length = 12232
Score = 68.0 bits (142), Expect(3) = 3e-027
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = -1 / -2
Query: 989 KPLSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIP 810
K SW+ +IALG AR + YLH+ C I+H + K NILLD+ F P ++D GLA P
Sbjct: 1851 KSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDTNFVPKVADFGLAKLYP 1672
Score = 67.5 bits (141), Expect(4) = 2e-029
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = -1 / +2
Query: 974 NSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLA 822
N + IALG AR +EYLH+ C+ I+H + K NILLD FNP +SD GLA
Sbjct: 8750 NKLLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLA 8902
Score = 48.7 bits (100), Expect(3) = 3e-027
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -1 / -2
Query: 1157 SSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSL 1023
+ +DF VS + ++HH N+ LVG+C E + LVY++ +GSL
Sbjct: 2010 NGEDFISEVSTLGRIHHVNVVRLVGFCSEELRRALVYEYMPHGSL 1876
Score = 42.3 bits (86), Expect(4) = 2e-029
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = -1 / +2
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFDSS 660
G ++KSDVYSFG+++LE+++GRR D S
Sbjct: 8996 GGISYKSDVYSFGMLVLEMVSGRRNSDPS 9082
Score = 41.8 bits (85), Expect(4) = 2e-029
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1 / +2
Query: 1145 FAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSD 999
F V+ I +HH N+ L+G+C E + L+Y+F N SL + D
Sbjct: 8573 FINEVATIGLIHHANIVRLLGFCSEGMRRALIYEFMPNESLEKYIFSHD 8719
Score = 39.6 bits (80), Expect(3) = 3e-027
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -1 / -2
Query: 746 GQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQ 642
G + KSDVYSFG+++LE+ GRR D + S Q
Sbjct: 1590 GVISSKSDVYSFGMLLLEMAGGRRNADPNAAASSQ 1486
Score = 29.0 bits (57), Expect(4) = 2e-029
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1 / +2
Query: 1268 FDNLVGEGTFGRVYRAQFNDGKVLAIKKLDS 1176
F VG+G FG VY+ + + +A+K L++
Sbjct: 8459 FKEKVGQGGFGSVYKGELPNRVPVAVKMLEN 8551
>emb|AJ629310.1| Avena strigosa partial s5.6 gene for receptor-like-kinase
Length = 1410
Score = 80.8 bits (170), Expect(3) = 4e-029
Identities = 31/58 (53%), Positives = 42/58 (72%)
Frame = -1 / -1
Query: 986 PLSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFI 813
PL W++R +IALGSAR L YLH+ C P IIH++ K++NILLD +F + D GLA +
Sbjct: 198 PLDWDTRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLM 25
Score = 53.8 bits (111), Expect(3) = 4e-029
Identities = 19/49 (38%), Positives = 35/49 (71%)
Frame = -1 / -3
Query: 1310 YSVADLQMATDSFSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMP 1164
+S+ +LQ+A+D+F+ N++G G FG+VY+ + DG ++A+K+L P
Sbjct: 652 FSLRELQVASDNFNNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTP 506
Score = 37.3 bits (75), Expect(3) = 4e-029
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -1 / -3
Query: 1145 FAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSL 1023
F V IS H NL L G+CM + LLVY + NGS+
Sbjct: 490 FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 368
>gb|CN815656.1|CN815656 HRO4514_A12_A24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A12_A24, mRNA sequence
Length = 877
Score = 61.1 bits (127), Expect(3) = 9e-026
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = -1 / +1
Query: 983 LSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLA 822
L W+ R+ I +G A L YLH +IH++ K NILLDSE N +SD GLA
Sbjct: 220 LDWDRRLAIIVGIAEGLLYLHRHSRLRVIHRDLKPGNILLDSEMNAKISDFGLA 381
Score = 48.7 bits (100), Expect(3) = 9e-026
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = -1 / +1
Query: 776 GYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRR 675
GY APE G ++ KSDV+SFGV++LE+L+G++
Sbjct: 442 GYMAPEYASHGLFSIKSDVFSFGVLVLEILSGKK 543
Score = 41.4 bits (84), Expect(3) = 9e-026
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = -1 / +1
Query: 1148 DFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLL 1011
+F V I+KL H NL +L+G C + + +LVY++ N SL D +
Sbjct: 58 EFKNEVELIAKLQHRNLVKLLGCCSQGEEKVLVYEYLPNKSLDDFI 195
>gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_C01_F02, mRNA sequence
Length = 537
Score = 81.7 bits (172), Expect(2) = 2e-025
Identities = 31/70 (44%), Positives = 46/70 (65%)
Frame = -1 / +2
Query: 983 LSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPGA 804
L W++R ++A+G+AR LEYLHE C+P IIH++ K++N+LLD F P + D GLA +
Sbjct: 53 LDWSARKRVAIGTARGLEYLHEHCNPKIIHRDVKAANVLLDEYFEPVVGDFGLAKLVDVQ 232
Query: 803 EFQAAEQSAG 774
+ Q G
Sbjct: 233 KTSVTTQVRG 262
Score = 51.0 bits (105), Expect(2) = 2e-025
Identities = 19/48 (39%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 776 GYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLV 633
G+ APE TG+ + ++DV+ +G+++LEL+TG+R D SR E+ ++
Sbjct: 269 GHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEEEVL 412
>gb|AY038002.1| Avena sativa isolate Pc68LrkA receptor kinase gene, complete cds
Length = 5106
Score = 51.9 bits (107), Expect(4) = 4e-022
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = -1 / +1
Query: 941 RALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLA 822
R +EYLH+ C+ I+H + K NILLD FNP +S GLA
Sbjct: 4648 RGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISVFGLA 4767
Score = 40.9 bits (83), Expect(4) = 4e-022
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1 / +3
Query: 1145 FAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSL 1023
F V+ I +HH N+ L+G+C E + L+Y+F N SL
Sbjct: 4434 FINEVATIGLIHHANIVRLLGFCSEGMRRALIYEFMPNESL 4556
Score = 33.6 bits (67), Expect(4) = 4e-022
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -1 / +2
Query: 728 SDVYSFGVVMLELLTGRRPFDSS 660
S VYSFG+++LE+++GRR D S
Sbjct: 4886 SHVYSFGMLVLEMVSGRRNSDPS 4954
Score = 29.0 bits (57), Expect(4) = 4e-022
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1 / +3
Query: 1268 FDNLVGEGTFGRVYRAQFNDGKVLAIKKLDS 1176
F VG+G FG VY+ + + +A+K L++
Sbjct: 4320 FKEKVGQGGFGSVYKGELPNRVPVAVKMLEN 4412
>gb|BE439208.1|BE439208 CDO1158_WHE03F03R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1158_WHE03, mRNA sequence
Length = 243
Score = 101 bits (216), Expect = 4e-022
Identities = 35/78 (44%), Positives = 58/78 (74%)
Frame = -1 / +3
Query: 1055 LVYDFHRNGSLHDLLHLSDEYSKPLSWNSRIKIALGSARALEYLHEICSPSIIHKNFKSS 876
LVY+ +LHD+ H ++ LSWN+R+++ALG+A+ALEYLH+ C PS++H+NF+ +
Sbjct: 3 LVYNHFSRKTLHDVFHEGEDLDSALSWNARLQVALGTAKALEYLHDTCEPSVVHQNFEPA 182
Query: 875 NILLDSEFNPHLSDAGLA 822
N+LL + F+ +++ GLA
Sbjct: 183 NVLLSNGFSVRVAECGLA 236
>gb|CN814959.1|CN814959 HRO4504_D01_H02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_D01_H02, mRNA sequence
Length = 522
Score = 65.7 bits (137), Expect(2) = 2e-021
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -1 / +2
Query: 602 DALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLVQ 444
D + + +DP LKG YP K +++ A V ALCVQ E EFRP MS VV+AL L+Q
Sbjct: 116 DTVKQCIDPRLKGDYPPKGVAKLAAVAALCVQYESEFRPSMSIVVKALSPLLQ 274
Score = 53.3 bits (110), Expect(2) = 2e-021
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -1 / +2
Query: 701 MLELLTGRRPFDSSRPRSEQSLVRWATPQL 612
+LELLTGR+P D + PR +QSLV WATP+L
Sbjct: 20 LLELLTGRKPVDHTMPRGQQSLVTWATPRL 109
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 31,649,134
Number of Sequences: 8143
Number of extensions: 474233
Number of successful extensions: 2120
Number of sequences better than 1.0e-020: 18
length of database: 1,567,487
effective HSP length: 46
effective length of database: 1,192,909
effective search space used: 993693197
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)