TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2922023.2.1
         (1122 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820717.1|CN820717  HRO4416_G05_N10ZS5 Lib AA069E1X Aven...    54   6e-022

>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
           sequence
          Length = 644

 Score = 53.8 bits (111), Expect(4) = 6e-022
 Identities = 22/43 (51%), Positives = 24/43 (55%)
 Frame = -2 / -1

                                                      
Query: 419 GTKYWLVKNSWGPEWGEKGYIRMARDVAAKEGHCGIAMEASYP 291
           G KYW+VKNS G  +G  GYI   R V    G CGIA    YP
Sbjct: 278 GKKYWIVKNSHGTSFGMGGYILFERGVTDSRGLCGIASSPVYP 150




 Score = 38.2 bits (77), Expect(4) = 6e-022
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2 / -1

                                                 
Query: 512 FQFYSEGVFSGRCGTELDHGVAAVGYGVTADGTKYWLV 399
           F  Y  GV+SG CG   +H V  VGYG  A   K + +
Sbjct: 374 FAKYKSGVYSGPCGYAYNHIVTIVGYGTDASTGKKYWI 261




 Score = 30.9 bits (61), Expect(4) = 6e-022
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2 / -1

                                            
Query: 596 VPANDESALKKAVAHQPVSVAIEASGSHFQFYS 498
           V +N+E  L +AVA QPV+  IE + S  ++ S
Sbjct: 455 VSSNNEQKLMEAVAKQPVTAVIEVAVSFAKYKS 357




 Score = 30.9 bits (61), Expect(4) = 6e-022
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2 / -1

                                        
Query: 719 AFQYIAKHGGVAAEDAYPYRARQASCKKS 633
           A  +I K+GG+  E  YPY  ++  C K+
Sbjct: 584 AIFWIWKNGGITTEADYPYMGKKGVCDKT 498



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 9,255,118
Number of Sequences: 8143
Number of extensions: 120539
Number of successful extensions: 1359
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 397825155
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)