TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763121.2.1
(1190 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidas... 64 2e-052
gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidas... 64 1e-048
gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Aven... 122 1e-037
gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Aven... 62 5e-023
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
complete cds
Length = 1191
Score = 64.3 bits (134), Expect(7) = 2e-052
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +2 / +1
Query: 62 ATAQLCEDYYDSTCPDAYDIVNQVLVDAVQSDTRIFGSLIRLHFHDCFV 208
A+AQL +YD++CP A + + AV SD R+ SL+RLHFHDCFV
Sbjct: 64 ASAQLSSTFYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 62.9 bits (131), Expect(7) = 2e-052
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +2 / +1
Query: 452 TSDFNGSLDLPEPTDNLTILQQKFSNLSLNDVDLVALSGGHTFGRVQCKFITDRLY 619
TS + DLP PT +L LQ FS +L+ D+VALSG HT G+ QCK R+Y
Sbjct: 673 TSATGNTGDLPAPTSSLAQLQAAFSKKNLDTTDMVALSGAHTIGQAQCKNFRSRIY 840
Score = 60.2 bits (125), Expect(7) = 2e-052
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +3
Query: 257 SEKTSAPNNGSARGFGVVDAAKAALESACPGVVSCADILAIAAEISV 397
+E+ +APN GS RGF V+D K +E+ C VSC DILA+AA SV
Sbjct: 369 NEQNAAPNAGSLRGFSVIDNIKTQVEAVCKQTVSCDDILAVAARDSV 509
Score = 45.5 bits (93), Expect(7) = 2e-052
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2 / +1
Query: 710 TALNDLDPTTPDTFDNNYYTNIEVNRGILNSDQELKSSPLAQGT 841
++L LD TP+ FDN+YY N+ +G+L+SDQ L ++ T
Sbjct: 922 SSLAPLDTKTPNAFDNSYYNNLLSQKGLLHSDQVLFNNGTTDNT 1053
Score = 34.1 bits (68), Expect(7) = 2e-052
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1 / +3
Query: 838 HHGAHRRPVRGQPRRLLRELRAVHDQHGEHQAA 936
HH HR+ +R Q + R L HDQ G+H AA
Sbjct: 1038 HHRQHRQELRVQRVGVHRRLHHRHDQDGKHLAA 1136
Score = 29.9 bits (59), Expect(7) = 2e-052
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2 / +1
Query: 407 GGPSWGVLLGRLDSKTSDFN 466
GGPSW V LGR DS ++ N
Sbjct: 631 GGPSWTVPLGRRDSTSATGN 690
Score = 23.1 bits (44), Expect(7) = 2e-052
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2 / +3
Query: 206 VQGCDASLLL 235
+QGCDAS+LL
Sbjct: 333 LQGCDASVLL 362
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
complete cds
Length = 1197
Score = 64.3 bits (134), Expect(6) = 1e-048
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +2 / +1
Query: 62 ATAQLCEDYYDSTCPDAYDIVNQVLVDAVQSDTRIFGSLIRLHFHDCFV 208
A+AQL +YD++CP A + + AV SD R+ SL+RLHFHDCFV
Sbjct: 64 ASAQLSSTFYDTSCPKALATIKSGVAAAVSSDRRMGASLLRLHFHDCFV 210
Score = 62.9 bits (131), Expect(6) = 1e-048
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = +2 / +3
Query: 257 SEKTSAPNNGSARGFGVVDAAKAALESACPGVVSCADILAIAAEISV 397
+E+ +APN GS RGF V+D K +E+ C VSCADILA+AA SV
Sbjct: 369 NEQNAAPNAGSLRGFSVIDNIKTQVEAVCKQTVSCADILAVAARDSV 509
Score = 59.7 bits (124), Expect(6) = 1e-048
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +2 / +1
Query: 452 TSDFNGSLDLPEPTDNLTILQQKFSNLSLNDVDLVALSGGHTFGRVQCKFITDRLY 619
TS + DLP PT +L LQ FS +L+ +VALSG HT G+ QCK R+Y
Sbjct: 679 TSATGNTGDLPAPTSSLAQLQAAFSKKNLDTTGMVALSGAHTIGQAQCKNFRSRIY 846
Score = 45.5 bits (93), Expect(6) = 1e-048
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2 / +1
Query: 710 TALNDLDPTTPDTFDNNYYTNIEVNRGILNSDQELKSSPLAQGT 841
++L LD TP+ FDN+YY N+ +G+L+SDQ L ++ T
Sbjct: 928 SSLAPLDTKTPNAFDNSYYNNLLSQKGLLHSDQVLFNNGTTDNT 1059
Score = 34.1 bits (68), Expect(6) = 1e-048
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1 / +3
Query: 838 HHGAHRRPVRGQPRRLLRELRAVHDQHGEHQAA 936
HH HR+ +R Q + R L HDQ G+H AA
Sbjct: 1044 HHRQHRQELRVQRVGVHRRLHHRHDQDGKHLAA 1142
Score = 23.1 bits (44), Expect(6) = 1e-048
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2 / +3
Query: 206 VQGCDASLLL 235
+QGCDAS+LL
Sbjct: 333 LQGCDASVLL 362
>gb|CN815961.1|CN815961 HRO4515_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D04_H07, mRNA sequence
Length = 721
Score = 122 bits (262), Expect(3) = 1e-037
Identities = 55/112 (49%), Positives = 66/112 (58%)
Frame = +2 / +2
Query: 479 LPEPTDNLTILQQKFSNLSLNDVDLVALSGGHTFGRVQCKFITDRLYNFSGTNMPDPTLD 658
+P P + L + KF L LN VD+VALSGGHT G +C RLYN SG + D TLD
Sbjct: 50 IPAPNNTLPTIITKFKRLGLNVVDVVALSGGHTIGLSRCTSFRQRLYNQSGNGLADSTLD 229
Query: 659 ASYRAFLTQRCPRNGDPTALNDLDPTTPDTFDNNYYTNIEVNRGILNSDQEL 814
SY A L Q CPR+G L LD T FDN Y+ NI RG+L+SD+ L
Sbjct: 230 VSYAAQLRQGCPRSGGDNNLFPLDVVTSTKFDNFYFKNILAGRGLLSSDEVL 385
Score = 38.6 bits (78), Expect(3) = 1e-037
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1 / +1
Query: 844 GAHRRPVRGQPRRLLRELRAVHDQHGEHQAAH 939
G R+ +RG+ LL LRAVH +HG H A+H
Sbjct: 406 GGPRQGLRGRRAPLLPALRAVHGEHG*HHASH 501
Score = 28.6 bits (56), Expect(3) = 1e-037
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2 / +2
Query: 947 SRGEVRTNCRRVN 985
S+GE+R NCRR+N
Sbjct: 506 SKGEIRKNCRRLN 544
>gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A06_B11, mRNA sequence
Length = 737
Score = 62.5 bits (130), Expect(3) = 5e-023
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +2 / +3
Query: 455 SDFNGSLDLPEPTDNLTILQQKFSNLSLNDVDLVALSGGHTFGRVQCKFITDRLYN 622
S N +LP PT +L L FSN L+ D++ALSG HT G+ QC+F R+YN
Sbjct: 21 SKSNAESNLPAPTFSLQNLTDNFSNKGLSLTDMIALSGAHTIGQSQCRFFRARIYN 188
Score = 53.3 bits (110), Expect(3) = 5e-023
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +2 / +3
Query: 710 TALNDLDPTTPDTFDNNYYTNIEVNRGILNSDQELKSSPLAQGTTA 847
++L LD TP+ FDN YYTN++ +G+L+SDQEL + A T +
Sbjct: 261 SSLAPLDTMTPNAFDNAYYTNLQSQKGLLHSDQELFNGGSADSTVS 398
Score = 24.9 bits (48), Expect(3) = 5e-023
Identities = 10/35 (28%), Positives = 12/35 (34%)
Frame = +2 / +3
Query: 836 GTTAPIVXXXXXXXXXXXXXXXXXMINMGNIKPLT 940
G+ V M+NMGNI P T
Sbjct: 375 GSADSTVSSFASSASTFSSAFATAMVNMGNIAPKT 479
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,368,411
Number of Sequences: 8143
Number of extensions: 165989
Number of successful extensions: 1385
Number of sequences better than 1.0e-020: 4
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 425636640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)