TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2762970.2.1
         (578 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816985.1|CN816985  HRO4527_A03_B05ZS5 Lib AA071E1X Aven...    99   7e-034
gb|CN820177.1|CN820177  HRO4412_A07_B14ZS5 Lib AA069E1X Aven...    73   4e-026

>gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4527_A03_B05, mRNA sequence
          Length = 608

 Score = 99.1 bits (211), Expect(2) = 7e-034
 Identities = 38/79 (48%), Positives = 53/79 (67%)
 Frame = +2 / +1

                                                                       
Query: 167 KNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEA 346
           ++GK+     LPL K A +ILVAG+HA+D+G QCGGWTI W G SG  T GT+IL  I+ 
Sbjct: 7   EDGKNLKETFLPLAKNAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQE 186

                              
Query: 347 TVDPSTQVVYSESPDSGVL 403
           +V   T+VV+ + P   ++
Sbjct: 187 SVGVETEVVHEQCPTDAII 243




 Score = 60.3 bits (126), Expect(2) = 7e-034
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +2 / +1

                                                                  
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
           + YA+VVVGE PYAE  GD  +L+IP  G  +   V      +V++ISGR LV++
Sbjct: 256 FSYAVVVVGEVPYAEWLGDRTDLSIPFNGSDLITRVASKVPTLVIVISGRPLVID 420



>gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4412_A07_B14, mRNA
           sequence
          Length = 675

 Score = 72.6 bits (153), Expect(2) = 4e-026
 Identities = 28/47 (59%), Positives = 33/47 (70%)
 Frame = +2 / +3

                                                          
Query: 176 KSSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTA 316
           K+     LPL K A +ILVAG+HA+D+G QCGGWTI W G SG  TA
Sbjct: 3   KNQKEMFLPLAKNAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITA 143




 Score = 60.3 bits (126), Expect(2) = 4e-026
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +2 / +1

                                                                  
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
           + YA+VVVGE PYAE  GD  +L+IP  G  +   V      +V++ISGR LV++
Sbjct: 244 FSYAVVVVGEVPYAEWLGDRTDLSIPFNGSDLITRVASKVPTLVIVISGRPLVID 408



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.316    0.137    0.438 


Matrix: BLOSUM62
Number of Hits to DB: 5,056,155
Number of Sequences: 8143
Number of extensions: 62924
Number of successful extensions: 1581
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 38
effective length of database: 1,258,053
effective search space used: 193740162
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)