TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750927.2.1
(1331 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRN... 189 7e-049
>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
Length = 904
Score = 189 bits (408), Expect = 7e-049
Identities = 82/165 (49%), Positives = 113/165 (68%)
Frame = +2 / +1
Query: 242 IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQ 421
IENKI+RQVTF+KRRNGLLKKAYELS+LCDAE ALIIFS RG+L+EF S+
Sbjct: 1 IENKISRQVTFAKRRNGLLKKAYELSLLCDAEDALIIFSGRGRLFEFSSSSCMYKTLERY 180
Query: 422 HCCYNAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQL 601
C L E + Y+E KL+ + E LQ +QR++LGE+LGPLS+KEL Q+E Q+
Sbjct: 181 RTCNYNSQEAAPLVENEINYREYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIESQI 360
Query: 602 ECALSQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHKLEAEGC 736
+ +L R RK Q++++Q+ +L+ KE+ L + N+ L+ KL+ C
Sbjct: 361 DVSLKHIRSRKNQVLLDQLFDLKSKEQELQDQNKDLRKKLQEMSC 495
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 16,626,610
Number of Sequences: 8143
Number of extensions: 270952
Number of successful extensions: 1359
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 482468805
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)