TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750436.2.1
(656 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819097.1|CN819097 HRO4468_H12_O24ZS5 Lib AA070E1X Aven... 118 1e-027
>gb|CN819097.1|CN819097 HRO4468_H12_O24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_H12_O24, mRNA sequence
Length = 808
Score = 118 bits (252), Expect = 1e-027
Identities = 50/103 (48%), Positives = 69/103 (66%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I E++ A+ G+G V+A V EIQ R D ++ER L+EL Q+FLDMA +
Sbjct: 256 IDNLIETGSSEQIFEKAIQGIGRGQVMATVQEIQERHDVVMDIERKLMELQQIFLDMAAL 435
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCL 348
V+TQGE LD+IES V NA ++VQ GN+ L AK Q+ SRKC+
Sbjct: 436 VDTQGEILDNIESQVQNAVNHVQIGNEALRSAKNMQKKSRKCM 564
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,391,703
Number of Sequences: 8143
Number of extensions: 63935
Number of successful extensions: 843
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 215684656
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)