TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821419.1|CN821419 HRO4425_B04_C07ZS5 Lib AA069E1X Aven... 145 1e-035
>gb|CN821419.1|CN821419 HRO4425_B04_C07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_B04_C07, mRNA
sequence
Length = 744
Score = 145 bits (312), Expect = 1e-035
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = -3 / +2
Query: 775 IWDCMSSQQLVDFIHERINTESSLSAVCERVLDRCLAPSTIAGDGCDNMTMILVQFKKPV 596
IWDCMSSQQLVDF+HE INTESSLSAVCE+VLDRCLAPST+ G+GCDNMTMILVQFKKP+
Sbjct: 11 IWDCMSSQQLVDFVHEHINTESSLSAVCEKVLDRCLAPSTLGGEGCDNMTMILVQFKKPI 190
Query: 595 DRNKKAEAAGQSA 557
A A QSA
Sbjct: 191 CHGNNASAGEQSA 229
Score = 131 bits (280), Expect = 4e-031
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = +3 / -1
Query: 561 DCPAASAFLFRSTGFLNCTRIMVMLSHPSPAIVDGARHLSSTLSHTADRLLSVFIRSWIK 740
DC A A L GFLNCTRI+VMLSHPSP VDGARHLSST SHTA+RLLSVF+ SW K
Sbjct: 225 DCSPALALLPWQIGFLNCTRIIVMLSHPSPPNVDGARHLSSTFSHTAERLLSVFMCSWTK 46
Query: 741 STSCWLDMQSQM 776
STSCWLDMQSQ+
Sbjct: 45 STSCWLDMQSQI 10
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 21,454,033
Number of Sequences: 8143
Number of extensions: 351781
Number of successful extensions: 1614
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 584912324
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)