TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA231841.1|AA231841 CDO1081.R cDNA from oat Avena sativa... 113 3e-028
gb|AA231699.1|AA231699 CDO1081.F cDNA from oat Avena sativa... 110 4e-025
>gb|AA231841.1|AA231841 CDO1081.R cDNA from oat Avena sativa cDNA clone CDO1081, mRNA
sequence
Length = 290
Score = 113 bits (242), Expect(2) = 3e-028
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = -1 / +1
Query: 948 ILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
ILAP SPNTDGIDPDSSS++ IEDCYI +GDD IA+KSGWDEYGI + PS I VRR+
Sbjct: 10 ILAPVHSPNTDGIDPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYGIRFNMPSQHIVVRRL 189
Query: 768 TGSSP 754
T SP
Sbjct: 190 TCISP 204
Score = 26.7 bits (52), Expect(2) = 3e-028
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1 / +1
Query: 750 AGFAVGSETSGGVENVLAE 694
A A+GSE SGG++++ AE
Sbjct: 211 AMIALGSEMSGGIQDIRAE 267
>gb|AA231699.1|AA231699 CDO1081.F cDNA from oat Avena sativa cDNA clone CDO1081, mRNA
sequence
Length = 210
Score = 110 bits (235), Expect = 4e-025
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / +2
Query: 948 ILAPHDSPNTDGIDPDSSSNICIEDCYISTGDDSIAIKSGWDEYGIAYGRPSSGITVRRI 769
ILAP SPNTDGI PDSSS++ IEDCYI +GDD IA+KSGWDEYGI + PS I VRR+
Sbjct: 2 ILAPVHSPNTDGIGPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYGIRFNMPSQHIVVRRL 181
Query: 768 TGSSP 754
T SP
Sbjct: 182 TCISP 196
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 14,350,269
Number of Sequences: 8143
Number of extensions: 247772
Number of successful extensions: 1734
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 420799860
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)