TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRN... 98 4e-021
>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
Length = 904
Score = 97.7 bits (207), Expect = 4e-021
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +3 / +1
Query: 276 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKGTIERYK 455
IEN +RQVTF KRRNGLLKKAYELS+LCDAE ALI+FS RGRL+E++++S
Sbjct: 1 IENKISRQVTFAKRRNGLLKKAYELSLLCDAEDALIIFSGRGRLFEFSSSSCMYKTLERY 180
Query: 456 KATSDNSSAAGTIAEVTIQHYKQESARLRQQIVNLQNSN 572
+ + NS A + E I + + + R + + N
Sbjct: 181 RTCNYNSQEAAPLVENEINYREYLKLKTRVEFLQSSQRN 297
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 14,881,363
Number of Sequences: 8143
Number of extensions: 225835
Number of successful extensions: 1104
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 490933170
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)