TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594147.2.1
(744 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Aven... 80 4e-021
>gb|CN820496.1|CN820496 HRO4413_A07_A13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_A07_A13, mRNA
sequence
Length = 642
Score = 79.9 bits (168), Expect(2) = 4e-021
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -1 / +1
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLTFSSGRALVASNAIPAGWNAGVAYRS 298
W PM++SWG++W+++S LQ PF++R+T SG+ LVA+N IPA W YRS
Sbjct: 82 WAPMRESWGSIWRMDSNHRLQAPFSMRITSDSGKQLVANNIIPANWRPNTDYRS 243
Score = 35.9 bits (72), Expect(2) = 4e-021
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1 / +1
Query: 549 YLAVLIEYEDSDSALDSVDMMQ 484
YLAVLIEYED D L VDM +
Sbjct: 1 YLAVLIEYEDMDGDLTQVDMKE 66
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,604,176
Number of Sequences: 8143
Number of extensions: 122758
Number of successful extensions: 1514
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 248336952
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)