TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591297.2.1
         (786 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821226.1|CN821226  HRO4428_H09_P18ZS5 Lib AA069E1X Aven...   129   5e-033
gb|CN819667.1|CN819667  HRO4402_G07_M14ZS5 Lib AA069E1X Aven...   102   2e-025

>gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4428_H09_P18, mRNA
           sequence
          Length = 425

 Score =  129 bits (277), Expect(2) = 5e-033
 Identities = 50/67 (74%), Positives = 55/67 (82%)
 Frame = -2 / +3

                                                                       
Query: 581 SYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRD 402
           SYR  HVDGCEASAEA+F ATQGARWWDQ EF+DLD  QYRRLA VR+ +TIYNYCTDR+
Sbjct: 12  SYRVLHVDGCEASAEAKFYATQGARWWDQKEFQDLDGEQYRRLAWVRKEHTIYNYCTDRE 191

                  
Query: 401 RYGAAVP 381
           RY    P
Sbjct: 192 RYATMSP 212




 Score = 26.3 bits (51), Expect(2) = 5e-033
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2 / +3

                         
Query: 392 AAVPPECARDRDV* 351
           A + PEC RDRDV*
Sbjct: 198 ATMSPECKRDRDV* 239



>gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4402_G07_M14, mRNA
           sequence
          Length = 393

 Score =  102 bits (218), Expect(3) = 2e-025
 Identities = 38/52 (73%), Positives = 43/52 (82%)
 Frame = -2 / +1

                                                               
Query: 536 ARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
           A+FCATQGARWWDQ EF+DLD  QYRRLA VR+ +TIYNYCTDR+RY    P
Sbjct: 13  AKFCATQGARWWDQKEFQDLDGEQYRRLAWVRKEHTIYNYCTDRERYTTMSP 168




 Score = 24.4 bits (47), Expect(3) = 2e-025
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2 / +1

                     
Query: 380 PECARDRDV* 351
           PEC RDRDV*
Sbjct: 166 PECKRDRDV* 195




 Score = 22.1 bits (42), Expect(3) = 2e-025
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1 / +1

                         
Query: 51  VYLYNFLLEKKKKK 10
           VYLY+ +  KKKKK
Sbjct: 349 VYLYDRVFCKKKKK 390



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,437,637
Number of Sequences: 8143
Number of extensions: 107096
Number of successful extensions: 1438
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 265379684
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)