TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550113.2.1
(803 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Aven... 241 1e-064
gb|CN816832.1|CN816832 HRO4525_C10_E19ZS5 Lib AA071E1X Aven... 237 4e-064
gb|CN815407.1|CN815407 HRO4509_C10_E19ZS5 Lib AA071E1X Aven... 221 9e-059
gb|CN821505.1|CN821505 HRO4426_B01_C02ZS5 Lib AA069E1X Aven... 178 8e-046
gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Aven... 159 7e-040
gb|CN814739.1|CN814739 HRO4502_A01_A02ZS5 Lib AA071E1X Aven... 141 6e-037
gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Aven... 143 3e-035
gb|CN820073.1|CN820073 HRO4410_G08_M16ZS5 Lib AA069E1X Aven... 129 6e-031
gb|CN820934.1|CN820934 HRO4421_F07_K13ZS5 Lib AA069E1X Aven... 116 8e-028
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
Length = 683
Score = 241 bits (521), Expect = 1e-064
Identities = 101/106 (95%), Positives = 101/106 (95%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
G GGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG
Sbjct: 26 GGGGGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 205
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRP EYKRSRLSRNRRTVNRPYGGVLSG AVRERIIRAFLVEE
Sbjct: 206 IPHLRPTEYKRSRLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVEE 343
Score = 209 bits (451), Expect = 5e-055
Identities = 89/110 (80%), Positives = 95/110 (86%)
Frame = +3 / -3
Query: 327 QSYFFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDL 506
+ +F VLSLVF F TFLTIFCSST+KAR+ILSLTA P+STPP*GRFTVLRFLDNLDL
Sbjct: 414 EELYFVAVLSLVFWIFRTFLTIFCSSTKKARIILSLTAGPESTPP*GRFTVLRFLDNLDL 235
Query: 507 LYSAGLRWGMPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
LYS GLR G+PWIFFPVTGHLGPLALF VYW TS PPGVLTTRV DFVA
Sbjct: 234 LYSVGLR*GIPWIFFPVTGHLGPLALFFVYW*TSFPPGVLTTRV*FDFVA 85
Score = 134 bits (288), Expect = 1e-032
Identities = 69/124 (55%), Positives = 75/124 (60%)
Frame = +1 / -1
Query: 328 RVTFLRKSCLWXXXXXXXXXXXXALQPGKHG*SFL*LQFQIVLPHRDGSQFCGS*TTWTF 507
R + L SCLW AL+P KH *S * Q Q L H+DGSQ CGS*TT T
Sbjct: 413 RSSTLWLSCLWFSGFSGPS*QSSALRPRKHE*SSP*QQVQKALHHKDGSQSCGS*TTLTS 234
Query: 508 CTQLASDGECPGSSSRSRDTWARWLSSWCTGTRACHQGS*RPASGWTSWHSCAACGRSDA 687
CTQ AS E PGSSS+ R TW R SS CTG +A H GS*RP S T SC A G+SDA
Sbjct: 233 CTQ*ASGEEFPGSSSQ*RGTWDR*PSSLCTGKQAFHLGS*RPGSDSTLSRSCDASGKSDA 54
Query: 688 APSC 699
APSC
Sbjct: 53 APSC 42
Score = 134 bits (287), Expect = 2e-032
Identities = 63/102 (61%), Positives = 74/102 (72%)
Frame = +2 / -2
Query: 410 ESTDDPFSNCSSR*YSPIGTVHSSAVPRQPGPFVLSWPQMGNALDLLPGHGTLGPAGSLL 589
EST++P N SR +S I TVHS AVPRQP P VLS PQ+ N+LDLLP +G LG A LL
Sbjct: 331 ESTNNPLPNSRSRKHSTIRTVHSPAVPRQP*PLVLSRPQVRNSLDLLPSNGALGTASPLL 152
Query: 590 GVLVHELATRGLDDPRLVGLRGIAVPLAVGQTLHHLAAVARA 715
VLV++L+T GLDDP L+ L +AV L V QTLHHLAA A A
Sbjct: 151 CVLVNKLSTWGLDDPGLIRLCRVAVTLPVSQTLHHLAAAAAA 26
Score = 89.5 bits (189), Expect(2) = 4e-036
Identities = 38/60 (63%), Positives = 47/60 (78%)
Frame = -1 / +1
Query: 698 QDGAASDLPQAAQLCHEVQPDAGRQDPWWQARVPVHQEESQRAQVSRDREEDPGHSPSEA 519
QDGAASDLP+A+QL +V+ D GRQDP W+A +PVH+EE R+QV R EEDPG+S EA
Sbjct: 43 QDGAASDLPEASQLRDKVESDPGRQDPRWKACLPVHKEEG*RSQVPRYWEEDPGNSSPEA 222
Score = 77.1 bits (162), Expect(2) = 4e-036
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = -1 / +1
Query: 488 EPQNCEPSLWGSTIWNCS*RKDHPCFPG*RAEDCQEGVEITEDQRQD 348
EPQ+CEPSLW S W C * +D+ CF G RAEDC EG E E+QRQD
Sbjct: 253 EPQDCEPSLWWSAFWTCC*GEDYSCFLGRRAEDC*EGPENPENQRQD 393
>gb|CN816832.1|CN816832 HRO4525_C10_E19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_C10_E19, mRNA sequence
Length = 544
Score = 237 bits (513), Expect(2) = 4e-064
Identities = 97/110 (88%), Positives = 100/110 (90%)
Frame = +3 / -2
Query: 327 QSYFFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDL 506
Q +FE VLSLVFC F TF TIFCSSTRKARMILSLTA P+STPP*GR TVLRFLDNLDL
Sbjct: 363 QVLYFEVVLSLVFCIFKTFFTIFCSSTRKARMILSLTAGPESTPP*GRLTVLRFLDNLDL 184
Query: 507 LYSAGLRWGMPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
LYS GLRWG+PWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLD VA
Sbjct: 183 LYSVGLRWGIPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDLVA 34
Score = 216 bits (466), Expect = 4e-057
Identities = 90/92 (97%), Positives = 90/92 (97%)
Frame = -2 / +2
Query: 673 RKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRL 494
RKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP EYKRSRL
Sbjct: 17 RKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRSRL 196
Query: 493 SRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
SRNRRTVNRPYGGVLSG AVRERIIRAFLVEE
Sbjct: 197 SRNRRTVNRPYGGVLSGPAVRERIIRAFLVEE 292
Score = 180 bits (388), Expect = 2e-046
Identities = 74/112 (66%), Positives = 83/112 (74%)
Frame = -1 / +1
Query: 674 PQAAQLCHEVQPDAGRQDPWWQARVPVHQEESQRAQVSRDREEDPGHSPSEASXXXXXXX 495
P+ AQLCH+VQPDAGRQDP W ARVPVHQEE R Q+ DREEDPG SP EA
Sbjct: 16 PEEAQLCHQVQPDAGRQDPRW*ARVPVHQEEG*RPQMPCDREEDPGDSPPEAYRVQKIKV 195
Query: 494 X*EPQNCEPSLWGSTIWNCS*RKDHPCFPG*RAEDCQEGVEITEDQRQDFLK 339
*EPQ+C+PSLW S +W CS*RKDH CFPG AEDC+E +E TE+Q QD LK
Sbjct: 196 V*EPQDCQPSLWWSALWTCS*RKDHSCFPGRGAEDCEESLENTENQGQDHLK 351
Score = 163 bits (351), Expect = 3e-041
Identities = 72/112 (64%), Positives = 76/112 (67%)
Frame = +1 / -3
Query: 340 LRKSCLWXXXXXXXXXXXXALQPGKHG*SFL*LQFQIVLPHRDGSQFCGS*TTWTFCTQL 519
LR SC W A +PGKH *SFL*LQ Q L HRDG Q CGS*TT FCT+
Sbjct: 350 LRWSCPWFSVFSRLSSQSSAPRPGKHE*SFL*LQVQRALHHRDG*QSCGS*TTLIFCTR* 171
Query: 520 ASDGECPGSSSRSRDTWARWLSSWCTGTRACHQGS*RPASGWTSWHSCAACG 675
AS GE PGSSSRS+ W R SSWCTGTRA H GS*RPASGWT WHSCA+ G
Sbjct: 170 ASGGESPGSSSRSQGIWGR*PSSWCTGTRAYHLGS*RPASGWTWWHSCASSG 15
Score = 146 bits (314), Expect = 4e-036
Identities = 65/87 (74%), Positives = 68/87 (78%)
Frame = +2 / -1
Query: 410 ESTDDPFSNCSSR*YSPIGTVHSSAVPRQPGPFVLSWPQMGNALDLLPGHGTLGPAGSLL 589
EST+DPFSNC SR +S IGTV S AVPRQP FVL PQ+GN LDLLPGH G A LL
Sbjct: 280 ESTNDPFSNCRSREHSTIGTVDSPAVPRQP*SFVLGRPQVGNPLDLLPGHRAFGAASPLL 101
Query: 590 GVLVHELATRGLDDPRLVGLRGIAVPL 670
GVLVHEL T GLDDPRLVGL GIAVPL
Sbjct: 100 GVLVHELTTWGLDDPRLVGLGGIAVPL 20
Score = 97.7 bits (207), Expect = 2e-021
Identities = 50/81 (61%), Positives = 52/81 (64%)
Frame = -3 / +3
Query: 666 GTAMXXXXXXXXXXXPLVASSCTSTPRREPAGPSVP*PGRRSRAFPI*GQLSTKGPGCLG 487
GTAM P V SSCTSTPRR A P+ *PGRRSR FP *G STK GCLG
Sbjct: 24 GTAMPPSPTRRGSSRPQVVSSCTSTPRRGLAAPNAL*PGRRSRGFPT*GLPSTKDQGCLG 203
Query: 486 TAEL*TVPMGEYYLELQLEKG 424
TA L TVPM E L+LQLEKG
Sbjct: 204 TAGLSTVPMVECSLDLQLEKG 266
Score = 22.1 bits (42), Expect(2) = 4e-064
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +1 / -2
Query: 289 VFPCCRRVAHFCFR 330
+FPC HF F+
Sbjct: 405 IFPCLHNSPHFSFK 364
>gb|CN815407.1|CN815407 HRO4509_C10_E19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C10_E19, mRNA sequence
Length = 573
Score = 221 bits (478), Expect = 9e-059
Identities = 92/94 (97%), Positives = 92/94 (97%)
Frame = -2 / +3
Query: 679 TYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRS 500
TYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP EYKRS
Sbjct: 3 TYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRS 182
Query: 499 RLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
RLSRNRRTVNRPYGGVLSG AVRERIIRAFLVEE
Sbjct: 183 RLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVEE 284
Score = 204 bits (441), Expect = 1e-053
Identities = 85/108 (78%), Positives = 88/108 (81%)
Frame = +3 / -3
Query: 333 YFFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLY 512
++F SLVF F TF TIFCSSTR ARMILSLTA PD TPP*GRFTVL FLDNLDLLY
Sbjct: 349 FYFAGCFSLVFWIFRTFFTIFCSSTRNARMILSLTAGPDRTPP*GRFTVLLFLDNLDLLY 170
Query: 513 SAGLRWGMPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
S GLR G+PWIF PVTGH GPLALF VYWYTS PPGVLTT VWLD VA
Sbjct: 169 SVGLR*GIPWIFLPVTGHFGPLALFFVYWYTSFPPGVLTTLVWLDLVA 26
Score = 128 bits (275), Expect = 9e-031
Identities = 57/108 (52%), Positives = 71/108 (65%)
Frame = -1 / +2
Query: 680 DLPQAAQLCHEVQPDAGRQDPWWQARVPVHQEESQRAQVSRDREEDPGHSPSEASXXXXX 501
D+P+AAQL H+VQPD GRQDP +ARVPVH+EE +RA++ R+EDPG S EA
Sbjct: 2 DVPEAAQLRHQVQPDQGRQDPRREARVPVHEEEGERAEMPGHRQEDPGDSSPEAY*VQKV 181
Query: 500 XXX*EPQNCEPSLWGSTIWNCS*RKDHPCFPG*RAEDCQEGVEITEDQ 357
E +N EPSLW +IW * +DHP P RA+D +EG E EDQ
Sbjct: 182 QIIQEQENREPSLWWCSIWPGC*GEDHPSIPCGRAKDREEGSEDPEDQ 325
Score = 110 bits (234), Expect = 4e-025
Identities = 53/89 (59%), Positives = 59/89 (66%)
Frame = +2 / -2
Query: 410 ESTDDPFSNCSSR*YSPIGTVHSSAVPRQPGPFVLSWPQMGNALDLLPGHGTLGPAGSLL 589
E +DDP N +R* + I TVH S VP GPFVLS PQ+ N LDLL G PA LL
Sbjct: 272 ECSDDPLPNSRAR*NTTIRTVHGSPVPG*SGPFVLSRPQVRNPLDLLAGDRAFRPARPLL 93
Query: 590 GVLVHELATRGLDDPRLVGLRGIAVPLAV 676
VLVHEL + GLDDP LVGL G+AVPL V
Sbjct: 92 RVLVHELPSWGLDDPGLVGLGGVAVPLPV 6
Score = 104 bits (222), Expect = 2e-023
Identities = 56/108 (51%), Positives = 58/108 (53%)
Frame = +1 / -1
Query: 358 WXXXXXXXXXXXXALQPGKHG*SFL*LQFQIVLPHRDGSQFCGS*TTWTFCTQLASDGEC 537
W AL G G*S * QI H+DGS+F S WTFCTQ AS E
Sbjct: 324 WSSGSSEPSSRSFALPQGMLG*SSP*QPGQIEHHHKDGSRFSCSWIIWTFCTQ*ASGEES 145
Query: 538 PGSSSRSRDTWARWLSSWCTGTRACHQGS*RPASGWTSWHSCAACGRS 681
PGSS R AR SS CTGTRA GS*RP SGWT W SCAA G S
Sbjct: 144 PGSSCR*PGISARSPSSSCTGTRASLLGS*RPWSGWTWWRSCAASGTS 1
>gb|CN821505.1|CN821505 HRO4426_B01_C02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_B01_C02, mRNA
sequence
Length = 459
Score = 178 bits (384), Expect = 8e-046
Identities = 73/84 (86%), Positives = 76/84 (90%)
Frame = +3 / -1
Query: 336 FFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYS 515
+FE VLSLVFC F TF TIFCSSTRKARMILSLTA P+STPP GR TVLRFLDNLDLLYS
Sbjct: 261 YFEVVLSLVFCIFKTFFTIFCSSTRKARMILSLTAGPESTPPYGRLTVLRFLDNLDLLYS 82
Query: 516 AGLRWGMPWIFFPVTGHLGPLALF 587
GLRWG+PWIFFPVTGHLGPLALF
Sbjct: 81 VGLRWGIPWIFFPVTGHLGPLALF 10
Score = 146 bits (314), Expect = 4e-036
Identities = 61/63 (96%), Positives = 61/63 (96%)
Frame = -2 / +2
Query: 586 KRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFL 407
KRASGPKCPVTGKKIQGIPHLRP EYKRSRLSRNRRTVNRPYGGVLSG AVRERIIRAFL
Sbjct: 11 KRASGPKCPVTGKKIQGIPHLRPTEYKRSRLSRNRRTVNRPYGGVLSGPAVRERIIRAFL 190
Query: 406 VEE 398
VEE
Sbjct: 191 VEE 199
Score = 117 bits (251), Expect = 2e-027
Identities = 49/84 (58%), Positives = 58/84 (69%)
Frame = -1 / +1
Query: 590 QEESQRAQVSRDREEDPGHSPSEASXXXXXXXX*EPQNCEPSLWGSTIWNCS*RKDHPCF 411
+EE R QV DREEDPG SP +A *EPQ+C+PS+W S +W CS*RKDH CF
Sbjct: 7 REEG*RPQVPCDREEDPGDSPPQAYRVQKIKVV*EPQDCQPSIWWSALWTCS*RKDHSCF 186
Query: 410 PG*RAEDCQEGVEITEDQRQDFLK 339
PG AEDC+E +E TE+Q QD LK
Sbjct: 187 PGRGAEDCEESLENTENQGQDHLK 258
>gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_D08_G16, mRNA
sequence
Length = 546
Score = 159 bits (341), Expect = 7e-040
Identities = 68/85 (80%), Positives = 73/85 (85%)
Frame = +3 / -2
Query: 327 QSYFFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDL 506
+ +F VLSLVF F TFLTIFCSST+KARMILSLTA P+STPP*GRFTVLRFLDNLDL
Sbjct: 257 EELYFVAVLSLVFWIFRTFLTIFCSSTKKARMILSLTAGPESTPP*GRFTVLRFLDNLDL 78
Query: 507 LYSAGLRWGMPWIFFPVTGHLGPLA 581
LYS GLR G+PWIFFPVT HLGP A
Sbjct: 77 LYSVGLR*GIPWIFFPVTEHLGPSA 3
Score = 136 bits (292), Expect = 4e-033
Identities = 57/61 (93%), Positives = 57/61 (93%)
Frame = -2 / +1
Query: 580 ASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVE 401
A GPKC VTGKKIQGIPHLRP EYKRSRLSRNRRTVNRPYGGVLSG AVRERIIRAFLVE
Sbjct: 4 AEGPKCSVTGKKIQGIPHLRPTEYKRSRLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVE 183
Query: 400 E 398
E
Sbjct: 184 E 186
>gb|CN814739.1|CN814739 HRO4502_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A01_A02, mRNA sequence
Length = 444
Score = 141 bits (303), Expect(2) = 6e-037
Identities = 58/69 (84%), Positives = 61/69 (88%)
Frame = +3 / -1
Query: 336 FFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYS 515
+FE VLSLVFC F TF TIFCSSTRKARMILSLTA P+STPP GR TVLRFLDNLDLLYS
Sbjct: 234 YFEVVLSLVFCIFKTFFTIFCSSTRKARMILSLTAGPESTPPYGRLTVLRFLDNLDLLYS 55
Query: 516 AGLRWGMPW 542
GLRWG+PW
Sbjct: 54 VGLRWGIPW 28
Score = 111 bits (236), Expect = 2e-025
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -2 / +2
Query: 568 KCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
+ P ++ QGIPHLRP EYKRSRLSRNRRTVNRPYGGVLSG AVRERIIRAFLVEE
Sbjct: 2 RVPCDWEEDQGIPHLRPTEYKRSRLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVEE 172
Score = 98.2 bits (208), Expect(2) = 5e-024
Identities = 39/68 (57%), Positives = 47/68 (69%)
Frame = -1 / +1
Query: 542 PGHSPSEASXXXXXXXX*EPQNCEPSLWGSTIWNCS*RKDHPCFPG*RAEDCQEGVEITE 363
PG SP +A *EPQ+C+PS+W S +W CS*RKDH CFPG AEDC+E +E TE
Sbjct: 28 PGDSPPQAYRVQKIKVV*EPQDCQPSIWWSALWTCS*RKDHSCFPGRGAEDCEESLENTE 207
Query: 362 DQRQDFLK 339
+Q QD LK
Sbjct: 208 NQGQDHLK 231
Score = 27.6 bits (54), Expect(2) = 6e-037
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / -3
Query: 531 GMPWIFFPVTGH 566
G P +FFPVTGH
Sbjct: 40 GNPLVFFPVTGH 5
Score = 27.6 bits (54), Expect(2) = 5e-024
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +3
Query: 565 CPVTGKKIQGIP 530
CPVTGKK +G P
Sbjct: 6 CPVTGKKTRGFP 41
>gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H11_P22, mRNA sequence
Length = 720
Score = 143 bits (307), Expect = 3e-035
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = +3 / -2
Query: 327 QSYFFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDL 506
+ +F VLSLVF F TFLTIFCSST+KARMILSLTA P+STPP*GRFTVLRFLDNLDL
Sbjct: 464 EELYFVAVLSLVFWIFRTFLTIFCSSTKKARMILSLTAGPESTPP*GRFTVLRFLDNLDL 285
Query: 507 LYSAGLRWGMPWIFFP 554
LYS GLR G+PWIFFP
Sbjct: 284 LYSVGLR*GIPWIFFP 237
Score = 119 bits (255), Expect = 5e-028
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = -2 / +1
Query: 559 VTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
++GKKIQGIPHLRP EYKRSRLSRNRRTVNRPYGGVLSG AVRERIIRAFLVEE
Sbjct: 232 LSGKKIQGIPHLRPTEYKRSRLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVEE 393
>gb|CN820073.1|CN820073 HRO4410_G08_M16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G08_M16, mRNA
sequence
Length = 384
Score = 129 bits (276), Expect = 6e-031
Identities = 56/66 (84%), Positives = 58/66 (87%)
Frame = +3 / -3
Query: 327 QSYFFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDL 506
Q +FE VLSLVFC F TF TIFCSSTRKARMILSLTA P+STPP*GRFTVLRFLDNLDL
Sbjct: 199 QVLYFEAVLSLVFCIFKTFFTIFCSSTRKARMILSLTAGPESTPP*GRFTVLRFLDNLDL 20
Query: 507 LYSAGL 524
LYS GL
Sbjct: 19 LYSVGL 2
Score = 97.3 bits (206), Expect = 3e-021
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = -1 / +2
Query: 488 EPQNCEPSLWGSTIWNCS*RKDHPCFPG*RAEDCQEGVEITEDQRQDFLK 339
EPQ+CEPSLW S +W CS*RKDHPCFPG AEDC+E +E TE+Q QD LK
Sbjct: 38 EPQDCEPSLWWSALWTCS*RKDHPCFPGRGAEDCEESLENTENQGQDCLK 187
>gb|CN820934.1|CN820934 HRO4421_F07_K13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_F07_K13, mRNA
sequence
Length = 395
Score = 116 bits (248), Expect(2) = 8e-028
Identities = 51/61 (83%), Positives = 53/61 (86%)
Frame = +3 / -3
Query: 327 QSYFFEEVLSLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDL 506
Q +FE VLSLVFC F TF TIFCSSTRKARMILSLTA P+STPP*GR TVLRFLDNLDL
Sbjct: 195 QVLYFEVVLSLVFCIFKTFFTIFCSSTRKARMILSLTAGPESTPP*GRLTVLRFLDNLDL 16
Query: 507 L 509
L
Sbjct: 15 L 13
Score = 22.1 bits (42), Expect(2) = 8e-028
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +1 / -3
Query: 289 VFPCCRRVAHFCFR 330
+FPC HF F+
Sbjct: 237 IFPCLHNSPHFSFK 196
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,225,011
Number of Sequences: 8143
Number of extensions: 131299
Number of successful extensions: 1140
Number of sequences better than 1.0e-020: 9
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 272683712
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)