TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2542512.2.1
         (834 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815399.1|CN815399  HRO4509_C02_E03ZS5 Lib AA071E1X Aven...    66   5e-031

>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4509_C02_E03, mRNA sequence
          Length = 660

 Score = 66.1 bits (138), Expect(3) = 5e-031
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = +1 / +1

                                                                 
Query: 166 LITMDDVPGLGYLQCVINETLRLYPVAPLLLPHESTADCTVGGYEVPRGTLLFV 327
           +IT  D+  L Y++ VI E LRL+P  PLLLP E+  DC + GY +P+GT +++
Sbjct: 142 VITNSDLGELHYMRMVIKEVLRLHPPFPLLLPRETREDCEIMGYNIPKGTNIYI 303




 Score = 61.1 bits (127), Expect(3) = 5e-031
 Identities = 26/67 (38%), Positives = 35/67 (52%)
 Frame = +2 / +1

                                                                       
Query: 431 PFGMGRRRCPGETLALRTAGLVLATLIQCFHWDRIDGAEIDMTESGGLTMPRAVPLEATC 610
           PFG GRR CPG   A  T  + LA L+  F W   DG  +DM E  G+T+ R   L+   
Sbjct: 418 PFGSGRRICPGIFFATSTIEIALANLLYHFDWKLPDGERVDMLEKFGITVRRKFDLQLVA 597

                  
Query: 611 KPREAMR 631
            P ++ +
Sbjct: 598 IPHQSKK 618




 Score = 40.0 bits (81), Expect(3) = 5e-031
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2 / +1

                                   
Query: 41  LFTAGTETTSSTIEWAMSLLLNHP 112
           LF A TETTS+ +EW MS L+N+P
Sbjct: 13  LFGAATETTSTALEWTMSELINNP 84



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 7,993,920
Number of Sequences: 8143
Number of extensions: 92793
Number of successful extensions: 1075
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 284857092
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)