TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521825.2.1
(2812 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817408.1|CN817408 HRO4454_E10_J20ZS5 Lib AA070E1X Aven... 116 2e-026
>gb|CN817408.1|CN817408 HRO4454_E10_J20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_E10_J20, mRNA sequence
Length = 484
Score = 116 bits (248), Expect = 2e-026
Identities = 49/57 (85%), Positives = 50/57 (87%)
Frame = +2 / -3
Query: 527 QVRGGERTLNEFGRLLKFVSGTPGTPSGDVK*STSWPTLPCPPKTRASESRATLYFP 697
QVRGG+R LNEFGRL KFVSGTPGTPSG VK*STSWPTLPCPP RASESRATL P
Sbjct: 182 QVRGGDRILNEFGRL*KFVSGTPGTPSGVVK*STSWPTLPCPPNIRASESRATLSSP 12
Score = 115 bits (245), Expect = 5e-026
Identities = 52/108 (48%), Positives = 66/108 (61%)
Frame = -2 / +1
Query: 696 GKYRVALDSDALXXXXXXXXXXXXXXFTSPEGVPGVPETNFNNRPNSFKVLSPPRTCVAY 517
G+ RVALDSDAL FT+PEGVPGVPETNF+NRPNSF++LSPPRTCV Y
Sbjct: 13 GEDRVALDSDALMFGGHGRVGHDVDHFTTPEGVPGVPETNFHNRPNSFRILSPPRTCVVY 192
Query: 516 YRVDEAGAGRRLHAKAETGKTSPAESIDVKASRASSKEDKEATAGGKK 373
Y VDE R+ + ++ IDV+A+ D +A +G +K
Sbjct: 193 YCVDEKAERRQKEEAFSSEESMAVGYIDVQATPVKGTTDGKAASGSRK 336
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 35,221,169
Number of Sequences: 8143
Number of extensions: 568835
Number of successful extensions: 2799
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 46
effective length of database: 1,192,909
effective search space used: 1061689010
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)