TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521686.2.1
         (2104 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815399.1|CN815399  HRO4509_C02_E03ZS5 Lib AA071E1X Aven...    58   1e-023

>gb|CN815399.1|CN815399 HRO4509_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4509_C02_E03, mRNA sequence
          Length = 660

 Score = 57.9 bits (120), Expect(3) = 1e-023
 Identities = 21/57 (36%), Positives = 34/57 (59%)
 Frame = -2 / +1

                                                                    
Query: 645 DVDVRGVDLRLAPFGAGRRVCPGKNLGLTTVGLWVARLVHAFQWALPDGAAAVCLDE 475
           +V+  G   +  PFG+GRR+CPG     +T+ + +A L++ F W LPDG     L++
Sbjct: 382 NVNYDGTHFKFTPFGSGRRICPGIFFATSTIEIALANLLYHFDWKLPDGERVDMLEK 552




 Score = 45.1 bits (92), Expect(3) = 1e-023
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2 / +1

                                              
Query: 771 GMVVPAGTTAMVNMWAITHDAAVWADPDAFAPERF 667
           G  +P GT   +N +AI+HD   W +P  F PERF
Sbjct: 268 GYNIPKGTNIYINAFAISHDPVFWDNPTEFNPERF 372




 Score = 40.5 bits (82), Expect(3) = 1e-023
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = -2 / +1

                                       
Query: 897 TDADVARMPYLQAVVKETLRAHPPGPLL 814
           T++D+  + Y++ V+KE LR HPP PLL
Sbjct: 148 TNSDLGELHYMRMVIKEVLRLHPPFPLL 231



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 20,797,337
Number of Sequences: 8143
Number of extensions: 314967
Number of successful extensions: 3437
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 46
effective length of database: 1,192,909
effective search space used: 780162486
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)