TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521641.2.1
         (594 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821108.1|CN821108  HRO4427_F02_L03ZS5 Lib AA069E1X Aven...    68   3e-021
gb|CN821143.1|CN821143  HRO4428_A02_B04ZS5 Lib AA069E1X Aven...    68   3e-021

>gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4427_F02_L03, mRNA
           sequence
          Length = 714

 Score = 68.0 bits (142), Expect(2) = 3e-021
 Identities = 31/70 (44%), Positives = 40/70 (57%)
 Frame = -1 / +2

                                                                       
Query: 531 SVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINA 352
           S+  +    GC  GF    +  ANPN+LVGA+V GPD  D F D R ++ ++EP    NA
Sbjct: 368 SIPHNGVHYGCKGGFKWRESKKANPNILVGAMVAGPDRHDGFKDIRTNYNYTEPTLAANA 547

                     
Query: 351 PLVGALAYLA 322
            LV AL  LA
Sbjct: 548 GLVAALISLA 577




 Score = 47.8 bits (98), Expect(2) = 3e-021
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -1 / +2

                                     
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAH 517
           Y+VGYG KYP+R+HHR +S+P    H
Sbjct: 314 YVVGYGKKYPKRVHHRGASIPHNGVH 391



>gb|CN821143.1|CN821143 HRO4428_A02_B04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4428_A02_B04, mRNA
           sequence
          Length = 636

 Score = 68.0 bits (142), Expect(2) = 3e-021
 Identities = 31/70 (44%), Positives = 40/70 (57%)
 Frame = -1 / +2

                                                                       
Query: 531 SVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINA 352
           S+  +    GC  GF    +  ANPN+LVGA+V GPD  D F D R ++ ++EP    NA
Sbjct: 125 SIPHNGVHYGCKGGFKWRESKKANPNILVGAMVAGPDRHDGFKDIRTNYNYTEPTLAANA 304

                     
Query: 351 PLVGALAYLA 322
            LV AL  LA
Sbjct: 305 GLVAALISLA 334




 Score = 47.8 bits (98), Expect(2) = 3e-021
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -1 / +2

                                     
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAH 517
           Y+VGYG KYP+R+HHR +S+P    H
Sbjct: 71  YVVGYGKKYPKRVHHRGASIPHNGVH 148



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 6,535,983
Number of Sequences: 8143
Number of extensions: 95544
Number of successful extensions: 2426
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 189949555
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)