TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521502.2.2
         (1862 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820717.1|CN820717  HRO4416_G05_N10ZS5 Lib AA069E1X Aven...    68   2e-034
gb|CN816125.1|CN816125  HRO4517_C06_E11ZS5 Lib AA071E1X Aven...   111   5e-027

>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
           sequence
          Length = 644

 Score = 67.5 bits (141), Expect(3) = 2e-034
 Identities = 26/53 (49%), Positives = 31/53 (58%)
 Frame = -1 / -1

                                                                
Query: 878 VTAVGYGTENGKDYWIVKNSWGSSWGESGYVRMERNIKASSGKCGIAVEPSYP 720
           +   G     GK YWIVKNS G+S+G  GY+  ER +  S G CGIA  P YP
Sbjct: 308 IVGYGTDASTGKKYWIVKNSHGTSFGMGGYILFERGVTDSRGLCGIASSPVYP 150




 Score = 66.1 bits (138), Expect(3) = 2e-034
 Identities = 30/68 (44%), Positives = 39/68 (57%)
 Frame = -1 / -1

                                                                        
Query: 1151 AFEFIINNGGIDTEKDYPYKGTDGRCDVNTKNAKVVTIDSYEDIPANDEKSLQKAVANQP 972
            A  +I  NGGI TE DYPY G  G CD        V++ S   + +N+E+ L +AVA QP
Sbjct: 584  AIFWIWKNGGITTEADYPYMGKKGVCDKTKLEHHTVSVLSVGYVSSNNEQKLMEAVAKQP 405

                    
Query: 971  VSVAIEAA 948
            V+  IE A
Sbjct: 404  VTAVIEVA 381




 Score = 46.4 bits (95), Expect(3) = 2e-034
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1 / -1

                                                
Query: 962 AIEAAGTAFQLYSSGIFTGSCGTALDHGVTAVGYGTE 852
           A+     +F  Y SG+++G CG A +H VT VGYGT+
Sbjct: 398 AVIEVAVSFAKYKSGVYSGPCGYAYNHIVTIVGYGTD 288



>gb|CN816125.1|CN816125 HRO4517_C06_E11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4517_C06_E11, mRNA sequence
          Length = 851

 Score =  111 bits (236), Expect(2) = 5e-027
 Identities = 35/44 (79%), Positives = 41/44 (93%)
 Frame = -1 / +3

                                                       
Query: 578 AWGCCPLEGATCCDDHYSCCPHDYPICNVRQGTCLMGKDSPLSL 447
           +WGCCPLEGA+CCDDHYSCCPHDYP+C+ R+GTC M KDSPLS+
Sbjct: 387 SWGCCPLEGASCCDDHYSCCPHDYPVCDTRRGTCSMTKDSPLSV 518




 Score = 26.3 bits (51), Expect(2) = 5e-027
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3 / +2

                      
Query: 450 TVSEGYEANPG 418
           TVSEGY+A+PG
Sbjct: 509 TVSEGYQAHPG 541



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 17,089,409
Number of Sequences: 8143
Number of extensions: 265891
Number of successful extensions: 1752
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 690604900
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)