TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2478398.2.5
         (1385 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816204.1|CN816204  HRO4518_B02_C04ZS5 Lib AA071E1X Aven...   159   1e-039

>gb|CN816204.1|CN816204 HRO4518_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4518_B02_C04, mRNA sequence
          Length = 687

 Score =  159 bits (341), Expect = 1e-039
 Identities = 61/68 (89%), Positives = 63/68 (92%)
 Frame = +3 / -1

                                                                       
Query: 783 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYEHLKPQKLSQRYVPRVF 962
           RSS VKIYCPKCED+YYPRSKYQ NIDGAYFGTTFPHL+LMTY HLKPQK SQ YVPRVF
Sbjct: 687 RSSNVKIYCPKCEDLYYPRSKYQSNIDGAYFGTTFPHLYLMTYPHLKPQKPSQEYVPRVF 508

                   
Query: 963 GFKLHKP* 986
           GFKLHKP*
Sbjct: 507 GFKLHKP* 484



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 14,796,098
Number of Sequences: 8143
Number of extensions: 217444
Number of successful extensions: 920
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 504234315
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)