TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2478290.2.1
         (1343 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815328.1|CN815328  HRO4508_E01_J02ZS5 Lib AA071E1X Aven...    87   6e-026
>gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4508_E01_J02, mRNA sequence
          Length = 229

 Score = 86.8 bits (183), Expect(2) = 6e-026
 Identities = 36/39 (92%), Positives = 38/39 (97%)
 Frame = +1 / +3

                                                  
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIM 549
           +V VNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVI+
Sbjct: 111 EVNVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVII 227

 Score = 46.4 bits (95), Expect(2) = 6e-026
 Identities = 17/25 (68%), Positives = 23/25 (92%)
 Frame = +1 / +3

                                    
Query: 316 FQVTTVDSGSKALQFLGLHDQDSTV 390
           F VTTVDSG+KAL+FLGLH +D+++
Sbjct: 9   FPVTTVDSGTKALEFLGLHGEDASI 83
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 15,829,801
Number of Sequences: 8143
Number of extensions: 238027
Number of successful extensions: 1446
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 487305585
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)