TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2477970.2.1
(699 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814982.1|CN814982 HRO4504_E12_J24ZS5 Lib AA071E1X Aven... 73 2e-027
>gb|CN814982.1|CN814982 HRO4504_E12_J24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_E12_J24, mRNA sequence
Length = 420
Score = 72.5 bits (152), Expect(2) = 2e-027
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +2 / +1
Query: 326 DKAPQIDVTQFGYFKVLGKGVLPPKPIVVKAKLISKVAEKKIK 454
DKAP IDVT+ G+FKVLGKG LP +P++VKAK SK AE++IK
Sbjct: 160 DKAPVIDVTKAGFFKVLGKGRLPNQPVIVKAKFFSKTAERRIK 288
Score = 64.3 bits (134), Expect(2) = 2e-027
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = +2 / +1
Query: 188 KYHPGYFGKVGMRYFHKLRNKFYCPAVNIERLWSMV 295
KY PGYFGK MR+FH RN+ +CP VNI++LWS+V
Sbjct: 16 KYFPGYFGKKLMRHFHLKRNQEHCPVVNIDKLWSLV 123
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,696,119
Number of Sequences: 8143
Number of extensions: 89805
Number of successful extensions: 1308
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 232841390
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)