TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448387.2.1
(919 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Aven... 123 5e-029
>gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D03_H05, mRNA sequence
Length = 633
Score = 123 bits (263), Expect = 5e-029
Identities = 50/97 (51%), Positives = 72/97 (74%)
Frame = -2 / +3
Query: 732 KELIKYKGFQVAPAELEAILLSHPSVEDAAVFGLPDEEAGEVPASCVVRRRGAPESEADM 553
KE+IKYKGFQVAPAELEA+L++HP ++DAAV G+ D+ GEVP + + R G+ +E ++
Sbjct: 60 KEIIKYKGFQVAPAELEALLITHPDIKDAAVVGVKDDLCGEVPVAFIKRIEGSEITENEI 239
Query: 552 MAYVAGRVASYKKLRLLRFVDAIPKSVSGKILRRQLR 442
+V+ V YK++ + F D+IPK+ SGKILR+ LR
Sbjct: 240 KQFVSKEVVFYKRINKVYFTDSIPKNPSGKILRKDLR 350
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,931,226
Number of Sequences: 8143
Number of extensions: 113302
Number of successful extensions: 853
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 318942556
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)