TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2441327.2.1
         (884 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE439371.1|BE439371  CDO1510_WHE05H09R ITEC CDO Oat cDNA ...   105   8e-024

>gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO1510_WHE05H09, mRNA sequence
          Length = 237

 Score =  105 bits (225), Expect = 8e-024
 Identities = 44/69 (63%), Positives = 56/69 (81%)
 Frame = +3 / +2

                                                                       
Query: 54  ELTLLGLWASPFVLRARIALSLKGLTYAYSEENLDDKSELLLSSNPVLKKVPVLIHHGKP 233
           ++ LLGL  SPFVLR R+AL +KG++Y Y E+++ DK ELLL  NPV KKVPVLIH+G P
Sbjct: 29  DVKLLGLLVSPFVLRVRMALQMKGVSYEYIEQDILDKGELLLKYNPVHKKVPVLIHNGVP 208

                    
Query: 234 VCESQIIVQ 260
           +CESQII+Q
Sbjct: 209 LCESQIILQ 235



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 8,088,074
Number of Sequences: 8143
Number of extensions: 105199
Number of successful extensions: 1602
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 305551838
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)